RNAquarium Metadata Server
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contig_metadata

8 rows where bioproject = "PRJNA896758" and tax_phylum = "Gemmatimonadota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 8 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA896758 · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2148219 2148219 PRJNA896758_P_NODE_25922_length_242_cov_0.911243_g25532_i0 PRJNA896758 25922 242 0.911243 2.20520806 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 130 9.79e-26   NTclustered gi|2874253728|emb|OY969570.1| 412054 g25532 i0 86.441 13.3305785123967 118 16 49 0 1 118 3774005 3773888 MAG: uncultured Gemmatimonadales bacterium isolate MFD02840.bin.c.1 genome assembly, chromosome: 1 blastn 3226 130 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
7250954 7250954 PRJNA896758_P_NODE_21666_length_250_cov_1.175141_g21276_i0 PRJNA896758 21666 250 1.175141 2.9378525 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 217 7.59e-52   NTclustered gi|2874253978|emb|OY970303.1| 412054 g21276 i0 90.476 158.468 168 11 66 5 85 250 3484289 3484453 MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 blastn 39617 217 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
11076431 11076431 PRJNA896758_P_NODE_4889_length_515_cov_0.857466_g4501_i0 PRJNA896758 4889 515 0.857466 4.4159499 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 676 0   NTclustered gi|2874253978|emb|OY970303.1| 412054 g4501 i0 90.559 91.3106796116505 519 37 99 8 3 515 5916994 5916482 MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 blastn 47025 676 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
21274758 21274758 PRJNA896758_P_NODE_21497_length_251_cov_0.865169_g21107_i0 PRJNA896758 21497 251 0.865169 2.17157419 Gemmatimonas groenlandica 2732249 Bacteria Bacteria 342 1.21e-89   NTclustered gi|1839994010|gb|CP053085.1| 2732249 g21107 i0 91.27 1.00398406374502 252 20 100 2 1 251 2284153 2283903 Gemmatimonas groenlandica strain TET16 chromosome, complete genome blastn 252 342 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas groenlandica
22549625 22549625 PRJNA896758_P_NODE_16138_length_286_cov_1.446009_g15748_i0 PRJNA896758 16138 286 1.446009 4.13558574 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 135 2.5500000000000003e-27   NTclustered gi|575456455|gb|CP007128.1| 861299 g15748 i0 89.72 0.374125874125874 107 9 37 2 181 286 4916867 4916762 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 107 135 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
24195468 24195468 PRJNA896758_P_NODE_20419_length_256_cov_1.683060_g20029_i0 PRJNA896758 20419 256 1.68306 4.3086336 Gemmatimonas 173479 Bacteria Bacteria 446 9.139999999999999e-121   NTclustered gi|470475286|ref|NR_076270.1| 173480 g20029 i0 98.047 429.29296875 256 5 100 0 1 256 929 674 Gemmatimonas aurantiaca strain T-27 23S ribosomal RNA gene, complete sequence blastn 109899 446 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas aurantiaca
27561016 27561016 PRJNA896758_P_NODE_20304_length_257_cov_1.635870_g19914_i0 PRJNA896758 20304 257 1.63587 4.2041859 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 84.3 1.47e-17   NR HLB09127.1 2026741 g19914 i0 44.6 0.968871595330739 83 45 96.9 1 3 251 130 211 HLB09127.1 hypothetical protein [Gemmatimonadaceae bacterium] diamond 249 84.3 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
31422221 31422221 PRJNA896758_P_NODE_24476_length_245_cov_0.895349_g24086_i0 PRJNA896758 24476 245 0.895349 2.19360505 Pseudomonadati 3379134 Bacteria Bacteria 63.5 1.68e-9   NR HLV27416.1 2448054 g24086 i0 51.5 1.66530612244898 68 32 82 1 44 244 199 266 HLV27416.1 serine hydrolase [Gemmatimonadales bacterium] diamond 408 63.5 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;