RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

5 rows where bioproject = "PRJNA896758", tax_kingdom = "Pseudomonadati" and tax_phylum = "Abditibacteriota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Abditibacteriota · 5 ✖

tax_kingdom 1

  • Pseudomonadati · 5 ✖

bioproject 1

  • PRJNA896758 · 5 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4701422 4701422 PRJNA896758_P_NODE_24904_length_244_cov_0.900585_g24514_i0 PRJNA896758 24904 244 0.900585 2.1974274 Abditibacteriota bacterium 2783868 Bacteria Bacteria 217 7.38e-52   NTclustered gi|2215576334|dbj|AP024152.1| 2783868 g24514 i0 85.577 450.368852459016 208 29 85 1 1 207 2851938 2852145 Abditibacteriota bacterium IAD-21 DNA, complete genome blastn 109890 217 1 Bacteria   Pseudomonadati Abditibacteriota         Abditibacteriota bacterium
11076281 11076281 PRJNA896758_P_NODE_10309_length_356_cov_1.487633_g9919_i0 PRJNA896758 10309 356 1.487633 5.29597348 Abditibacteriota bacterium 2783868 Bacteria Bacteria 316 1.08e-81   NTclustered gi|2215576334|dbj|AP024152.1| 2783868 g9919 i0 83.149 152.837078651685 362 46 100 11 1 356 2852367 2852015 Abditibacteriota bacterium IAD-21 DNA, complete genome blastn 54410 316 1 Bacteria   Pseudomonadati Abditibacteriota         Abditibacteriota bacterium
13626695 13626695 PRJNA896758_P_NODE_791_length_1302_cov_1.803092_g563_i0 PRJNA896758 791 1302 1.803092 23.47625784 Abditibacteriota bacterium 2783868 Bacteria Bacteria 1428 0   NTclustered gi|2215576334|dbj|AP024152.1| 2783868 g563 i0 86.778 217.822580645161 1316 127 100 23 1 1302 2850722 2852004 Abditibacteriota bacterium IAD-21 DNA, complete genome blastn 283605 1428 1 Bacteria   Pseudomonadati Abditibacteriota         Abditibacteriota bacterium
16175562 16175562 PRJNA896758_P_NODE_18573_length_270_cov_1.233503_g18183_i0 PRJNA896758 18573 270 1.233503 3.3304581 Abditibacteriota bacterium 2783868 Bacteria Bacteria 231 2.96e-56   NTclustered gi|2215576334|dbj|AP024152.1| 2783868 g18183 i0 83.267 63.7333333333333 251 42 93 0 2 252 5084418 5084668 Abditibacteriota bacterium IAD-21 DNA, complete genome blastn 17208 231 1 Bacteria   Pseudomonadati Abditibacteriota         Abditibacteriota bacterium
19999366 19999366 PRJNA896758_P_NODE_13976_length_307_cov_2.303419_g13586_i0 PRJNA896758 13976 307 2.303419 7.07149633 Abditibacterium utsteinense 1960156 Bacteria Bacteria 556 4.98e-154   NTclustered gi|1124890760|gb|KY386300.1| 1960156 g13586 i0 99.349 93.5342019543974 307 2 100 0 1 307 1139 1445 Abditibacterium utsteinense strain R-68168 16S ribosomal RNA gene, partial sequence blastn 28715 556 1 Bacteria   Pseudomonadati Abditibacteriota Abditibacteriia Abditibacteriales Abditibacteriaceae Abditibacterium Abditibacterium utsteinense

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;