RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

20 rows where bioproject = "PRJNA896758" and tax_clade = "core chlorophytes"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 20 ✖

bioproject 1

  • PRJNA896758 · 20 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
872773 872773 PRJNA896758_P_NODE_12101_length_331_cov_1.112403_g11711_i0 PRJNA896758 12101 331 1.112403 3.68205393 Chlamydomonas incerta 51695 Plants Plants 187 8.189999999999998e-43   NTclustered gi|74272706|gb|DQ122918.1| 51695 g11711 i0 83.663 70.0030211480363 202 29 60 4 20 219 520 321 Chlamydomonas incerta S-adenosyl-L-methionine synthetase (SAMS) mRNA, partial cds blastn 23171 187 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas incerta
1243915 1243915 PRJNA896758_P_NODE_24161_length_246_cov_0.890173_g23771_i0 PRJNA896758 24161 246 0.890173 2.18982558 Halofilum 1929135 Plants Plants 455 1.4500000000000002e-123   NTclustered gi|1189013853|gb|MF034634.1| 97102 g23771 i0 100 101.272357723577 246 0 100 0 1 246 1430 1185 Halofilum salinum strain SAG 1.95 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 24913 455 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Ulvales   Halofilum Halofilum salinum
1243931 1243931 PRJNA896758_P_NODE_5161_length_500_cov_1.857143_g4772_i0 PRJNA896758 5161 500 1.857143 9.285715 Eukaryota 2759 Plants Plants 54.7 0.014   NTclustered gi|2082258891|ref|XM_043067628.1| 3055 g4772 i0 88.636 0.612 44 5 9 0 293 336 4402 4359 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_11g476100v5), mRNA blastn 306 54.7 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
5976194 5976194 PRJNA896758_P_NODE_3965_length_574_cov_2.668663_g3583_i0 PRJNA896758 3965 574 2.668663 15.31812562 Pedinomonas sp. UTEX 'LB 1027' 1108795 Plants Plants 250 1.87e-61   NTclustered gi|371782101|emb|HE610133.1| 1108795 g3583 i0 79.683 31.8780487804878 379 52 64 18 1 366 4726 5092 Pedinomonas sp. UTEX 1027 18S rRNA gene (partial), 5.8S rRNA gene, 28S rRNA gene (partial), ITS1 and ITS2, strain UTEX 1027 blastn 18298 250 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Pedinophyceae Pedinomonadales Pedinomonadaceae Pedinomonas Pedinomonas sp. UTEX 'LB 1027'
7621938 7621938 PRJNA896758_P_NODE_12326_length_328_cov_0.925490_g11936_i0 PRJNA896758 12326 328 0.92549 3.0356072 Bryopsis 3128 Plants Plants 281 3.61e-71   NTclustered gi|969822372|gb|KT950953.1| 3129 g11936 i0 82.911 94.6585365853659 316 50 96 4 12 325 740 427 Bryopsis maxima actin gene, partial cds blastn 31048 281 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Bryopsidales Bryopsidaceae Bryopsis Bryopsis maxima
14900805 14900805 PRJNA896758_P_NODE_25352_length_243_cov_0.905882_g24962_i0 PRJNA896758 25352 243 0.905882 2.20129326 Stichococcus bacillaris 37433 Plants Plants 313 9.1e-81   NTclustered gi|371782093|emb|HE610125.1| 37433 g24962 i0 96.316 17.1646090534979 190 7 78 0 54 243 7182 6993 Stichococcus bacillaris 18S rRNA gene (partial), 5.8S rRNA gene, 28S rRNA gene (partial), ITS1 and ITS2, strain SAG 379-2 blastn 4171 313 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Stichococcaceae Stichococcus Stichococcus bacillaris
16175631 16175631 PRJNA896758_P_NODE_3513_length_613_cov_2.694444_g3132_i0 PRJNA896758 3513 613 2.694444 16.51694172 Chlorophyta 3041 Plants Plants 248 8.85e-74   NR PRW32846.1 3076 g3132 i0 74.9 28.1500815660685 179 45 87.6 0 613 77 2 180 PRW32846.1 60S ribosomal L19-2 isoform A [Chlorella sorokiniana] diamond 17256 248 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella sorokiniana
19999499 19999499 PRJNA896758_P_NODE_6716_length_437_cov_3.214286_g6326_i0 PRJNA896758 6716 437 3.214286 14.04642982 Chlorella variabilis 554065 Plants Plants 255 3e-63   NTclustered gi|552813385|ref|XM_005843877.1| 554065 g6326 i0 81.731 17.6064073226545 312 52 71 5 63 372 1369 1061 Chlorella variabilis hypothetical protein (CHLNCDRAFT_59785) mRNA, complete cds blastn 7694 255 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella variabilis
25098889 25098889 PRJNA896758_P_NODE_25480_length_243_cov_0.905882_g25090_i0 PRJNA896758 25480 243 0.905882 2.20129326 Hazenia capsulata 2202518 Plants Plants 363 8.909999999999999e-96   NTclustered gi|2724824830|gb|PP746569.1| 2202518 g25090 i0 93.827 6.0082304526749 243 12 100 3 1 243 21060 21299 Hazenia capsulata culture UTEX:1918 mitochondrion, complete genome blastn 1460 363 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Ulotrichales Hazeniaceae Hazenia Hazenia capsulata
27348078 27348078 PRJNA896758_P_NODE_21863_length_250_cov_0.870056_g21473_i0 PRJNA896758 21863 250 0.870056 2.17514 Coccomyxa 41891 Plants Plants 57 4.01e-7   NR CAL8470626.1 1965095 g21473 i0 44.6 4.104 65 36 78 0 201 7 1735 1799 CAL8470626.1 g10168 [Coccomyxa elongata] diamond 1026 57 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa elongata
27498175 27498175 PRJNA896758_P_NODE_12803_length_321_cov_1.862903_g12413_i0 PRJNA896758 12803 321 1.862903 5.97991863 Chlorella desiccata (nom. nud.) 1650286 Plants Plants 45.8 0.00297   NR KAG7671249.1 1650286 g12413 i0 49.2 0.570093457943925 61 23 49.5 2 320 162 81 141 KAG7671249.1 hypothetical protein KSW81_003387 [Chlorella desiccata (nom. nud.)] diamond 183 45.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Nannochloris Nannochloris sp. 'desiccata'
27529636 27529636 PRJNA896758_P_NODE_9643_length_367_cov_1.897959_g9253_i0 PRJNA896758 9643 367 1.897959 6.96550953 Volvox carteri f. nagariensis 3068 Plants Plants 51.6 9.71e-5   NR XP_002957370.1 3068 g9253 i0 41.3 1.25068119891008 63 37 51.5 0 84 272 40 102 XP_002957370.1 chitinase, lysozyme [Volvox carteri f. nagariensis] diamond 459 51.6 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Volvox Volvox carteri
27845218 27845218 PRJNA896758_P_NODE_17564_length_277_cov_0.906863_g17174_i0 PRJNA896758 17564 277 0.906863 2.51201051 Volvox carteri f. nagariensis 3068 Plants Plants 45.1 0.00633   NR XP_002948120.1 3068 g17174 i0 43.1 0.703971119133574 65 31 70.4 1 75 269 130 188 XP_002948120.1 uncharacterized protein VOLCADRAFT_88419 [Volvox carteri f. nagariensis] diamond 195 45.1 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Volvox Volvox carteri
28318955 28318955 PRJNA896758_P_NODE_25126_length_244_cov_0.900585_g24736_i0 PRJNA896758 25126 244 0.900585 2.1974274 [Myrmecia] bisecta 41462 Plants Plants 45.1 0.00569   NR KAK9803630.1 41462 g24736 i0 36.8 0.700819672131147 57 36 70.1 0 173 3 509 565 KAK9803630.1 hypothetical protein WJX72_007017 [[Myrmecia] bisecta] diamond 171 45.1 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Myrmecia [Myrmecia] bisecta
28540258 28540258 PRJNA896758_P_NODE_14487_length_301_cov_1.877193_g14097_i0 PRJNA896758 14487 301 1.877193 5.65035093 Monoraphidium minutum 39955 Plants Plants 42.4 0.0296   NR KAI8470570.1 39955 g14097 i0 66.7 0.32890365448505 33 10 32.9 1 74 172 53 84 KAI8470570.1 MAG: hypothetical protein J3K34DRAFT_468978 [Monoraphidium minutum] diamond 99 42.4 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium minutum
29266044 29266044 PRJNA896758_P_NODE_23749_length_246_cov_1.780347_g23359_i0 PRJNA896758 23749 246 1.780347 4.37965362 [Myrmecia] bisecta 41462 Plants Plants 45.4 0.00447   NR KAK9816436.1 41462 g23359 i0 32.1 0.98780487804878 81 50 98.8 1 1 243 243 318 KAK9816436.1 hypothetical protein WJX72_000212 [[Myrmecia] bisecta] diamond 243 45.4 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Myrmecia [Myrmecia] bisecta
29707830 29707830 PRJNA896758_P_NODE_26470_length_241_cov_0.916667_g26080_i0 PRJNA896758 26470 241 0.916667 2.20916747 Volvox africanus 51714 Plants Plants 52.8 8.05e-6   NR GLI69515.1 51714 g26080 i0 33.8 2.73858921161826 74 48 92.1 1 228 7 154 226 GLI69515.1 hypothetical protein VaNZ11_014151 [Volvox africanus] diamond 660 52.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Volvox Volvox africanus
30505784 30505784 PRJNA896758_P_NODE_23933_length_246_cov_0.890173_g23543_i0 PRJNA896758 23933 246 0.890173 2.18982558 Eukaryota 2759 Plants Plants 61.6 4.13e-9   NR KAF5838424.1 3046 g23543 i0 46.2 2.3780487804878 65 35 79.3 0 52 246 1 65 KAF5838424.1 ribosomal protein L10-domain-containing protein [Dunaliella salina] diamond 585 61.6 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Dunaliellaceae Dunaliella Dunaliella salina
30687502 30687502 PRJNA896758_P_NODE_24753_length_244_cov_1.637427_g24363_i0 PRJNA896758 24753 244 1.637427 3.99532188 Chlorella desiccata (nom. nud.) 1650286 Plants Plants 70.9 4.61e-12   NR KAL4531732.1 1650286 g24363 i0 39 3 82 48 98.4 1 243 4 164 245 KAL4531732.1 hypothetical protein Ndes2437A_g09046 [Chlorella desiccata (nom. nud.)] diamond 732 70.9 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Nannochloris Nannochloris sp. 'desiccata'
31161192 31161192 PRJNA896758_P_NODE_26115_length_242_cov_0.911243_g25725_i0 PRJNA896758 26115 242 0.911243 2.20520806 Monoraphidium neglectum 145388 Plants Plants 75.5 1.08e-13   NR XP_013902452.1 145388 g25725 i0 62.5 1.38842975206612 56 21 69.4 0 238 71 139 194 XP_013902452.1 leucyl aminopeptidase [Monoraphidium neglectum] diamond 336 75.5 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;