RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA896758", tax_clade = "Sar" and tax_phylum = "Endomyxa"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Endomyxa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA896758 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5976092 5976092 PRJNA896758_P_NODE_14765_length_298_cov_1.444444_g14375_i0 PRJNA896758 14765 298 1.444444 4.30444312 Arachnula sp. CL22 862246 SAR_Eukaryotes SAR_Eukaryotes 265 3.2699999999999997e-66   NTclustered gi|301014696|gb|GQ377694.1| 862246 g14375 i0 88.288 87.5469798657718 222 24 74 2 66 286 3 223 Arachnula sp. CL22 ribosomal protein S23a (rps23a) mRNA, partial cds blastn 26089 265 1 Eukaryota Sar   Endomyxa   Vampyrellida Leptophryidae Arachnula Arachnula sp. CL22
29487041 29487041 PRJNA896758_P_NODE_23950_length_246_cov_0.890173_g23560_i0 PRJNA896758 23950 246 0.890173 2.18982558 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 94 3.52e-20   NR CEO96745.1 37360 g23560 i0 51.3 3.97560975609756 80 39 97.6 0 240 1 293 372 CEO96745.1 hypothetical protein PBRA_005349 [Plasmodiophora brassicae] diamond 978 94 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
31383020 31383020 PRJNA896758_P_NODE_26936_length_226_cov_2.013072_g26546_i0 PRJNA896758 26936 226 2.013072 4.54954272 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 57.8 1.48e-7   NR CEO95800.1 37360 g26546 i0 48.2 1.5 56 29 74.3 0 168 1 12 67 CEO95800.1 hypothetical protein PBRA_004513 [Plasmodiophora brassicae] diamond 339 57.8 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;