RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA896758", tax_clade = "PVC group" and tax_phylum = "Chlamydiota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 3 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJNA896758 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27466654 27466654 PRJNA896758_P_NODE_18283_length_272_cov_1.331658_g17893_i0 PRJNA896758 18283 272 1.331658 3.62210976 Simkania sp. 34094 Bacteria Bacteria 133 1.93e-36   NR MCB1084310.1 34094 g17893 i0 86.8 0.838235294117647 76 10 83.8 0 271 44 46 121 MCB1084310.1 hypothetical protein [Simkania sp.] diamond 228 133 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Simkaniaceae Simkania Simkania sp.
29676321 29676321 PRJNA896758_P_NODE_15190_length_293_cov_1.172727_g14800_i0 PRJNA896758 15190 293 1.172727 3.43609011 Rhabdochlamydiaceae bacterium 2047756 Bacteria Bacteria 102 9.5e-23   NR HSX03888.1 2047756 g14800 i0 49 1.00341296928328 98 46 98.3 2 289 2 101 196 HSX03888.1 hypothetical protein [Rhabdochlamydiaceae bacterium] diamond 294 102 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Candidatus Rhabdochlamydiaceae   Rhabdochlamydiaceae bacterium
30813948 30813948 PRJNA896758_P_NODE_18874_length_268_cov_1.184615_g18484_i0 PRJNA896758 18874 268 1.184615 3.1747682 Chlamydiales bacterium 2047757 Bacteria Bacteria 129 7.35e-36   NR MCP5470420.1 2047757 g18484 i0 83.8 0.828358208955224 74 12 82.8 0 1 222 8 81 MCP5470420.1 ribosomal protein L24e family protein [Chlamydiales bacterium] diamond 222 129 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;