RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

7 rows where bioproject = "PRJNA896758" and tax_clade = "Metamonada"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 2

analysis 2

tax_superkingdom 1

tax_clade 1

  • Metamonada · 7 ✖

bioproject 1

  • PRJNA896758 · 7 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2148104 2148104 PRJNA896758_P_NODE_13042_length_318_cov_1.983673_g12652_i0 PRJNA896758 13042 318 1.983673 6.30808014 Monocercomonoides exilis 2049356 Preaxostyla other_Eukaryota 60.2 1.78e-4   NTclustered gi|2794970009|ref|XM_067877330.1| 2049356 g12652 i0 89.583 0.238993710691824 48 3 14 2 220 265 3250 3203 Monocercomonoides exilis DNA repair endonuclease XPF (MONOS_7037), partial mRNA blastn 76 60.2 1 Eukaryota Metamonada   Preaxostyla   Oxymonadida Polymastigidae Monocercomonoides Monocercomonoides exilis
12351753 12351753 PRJNA896758_P_NODE_14230_length_305_cov_0.991379_g13840_i0 PRJNA896758 14230 305 0.991379 3.02370595 Monocercomonoides exilis 2049356 Preaxostyla other_Eukaryota 219 2.6499999999999998e-52   NTclustered gi|2794977019|ref|XM_067869277.1| 2049356 g13840 i0 79.866 10.3508196721311 298 60 98 0 2 299 466 169 Monocercomonoides exilis putative Calmodulin (MONOS_16368), mRNA blastn 3157 219 1 Eukaryota Metamonada   Preaxostyla   Oxymonadida Polymastigidae Monocercomonoides Monocercomonoides exilis
28760917 28760917 PRJNA896758_P_NODE_15647_length_289_cov_1.425926_g15257_i0 PRJNA896758 15647 289 1.425926 4.12092614 Anaeramoeba ignava 1746090 Root_unresolved Root_unresolved 107 1.02e-24   NR KAJ5076851.1 1746090 g15257 i0 60.8 6.41522491349481 79 31 82 0 45 281 417 495 KAJ5076851.1 RNA recognition motif rrm domain containing protein [Anaeramoeba ignava] diamond 1854 107 1 Eukaryota Metamonada         Anaeramoebidae Anaeramoeba Anaeramoeba ignava
28958407 28958407 PRJNA896758_P_NODE_24528_length_245_cov_0.895349_g24138_i0 PRJNA896758 24528 245 0.895349 2.19360505 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 54.3 3.23e-6   NR KAJ4462935.1 342808 g24138 i0 44.4 2.15510204081633 54 27 62.4 1 64 216 37 90 KAJ4462935.1 putative translation initiation factor 4E [Paratrimastix pyriformis] diamond 528 54.3 1 Eukaryota Metamonada   Preaxostyla     Paratrimastigidae Paratrimastix Paratrimastix pyriformis
31383006 31383006 PRJNA896758_P_NODE_18816_length_268_cov_1.579487_g18426_i0 PRJNA896758 18816 268 1.579487 4.23302516 Anaeramoeba flamelloides 1746091 Root_unresolved Root_unresolved 52.8 1.47e-5   NR KAJ3446930.1 1746091 g18426 i0 36 1.67910447761194 75 46 81.7 1 6 224 382 456 KAJ3446930.1 regulator of g protein signaling [Anaeramoeba flamelloides] diamond 450 52.8 1 Eukaryota Metamonada         Anaeramoebidae Anaeramoeba Anaeramoeba flamelloides
31730693 31730693 PRJNA896758_P_NODE_22377_length_249_cov_0.875000_g21987_i0 PRJNA896758 22377 249 0.875 2.17875 Anaeramoeba ignava 1746090 Root_unresolved Root_unresolved 66.2 2.1e-10   NR KAJ5071081.1 1746090 g21987 i0 46.3 0.650602409638554 54 29 65.1 0 3 164 810 863 KAJ5071081.1 hypothetical protein M0811_10565 [Anaeramoeba ignava] diamond 162 66.2 1 Eukaryota Metamonada         Anaeramoebidae Anaeramoeba Anaeramoeba ignava
32237393 32237393 PRJNA896758_P_NODE_10558_length_352_cov_1.594982_g10168_i0 PRJNA896758 10558 352 1.594982 5.61433664 Giardia intestinalis 5741 Fornicata other_Eukaryota 51.6 7.07e-5   NR ESU35215.1 5741 g10168 i0 41.5 0.553977272727273 65 29 51.1 3 207 28 51 111 ESU35215.1 Variant-specific surface protein [Giardia intestinalis] diamond 195 51.6 1 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Giardia Giardia duodenalis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;