RNAquarium Metadata Server
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contig_metadata

1 row where bioproject = "PRJNA896554", tax_kingdom = "Pararnavirae" and tax_superkingdom = "Viruses"

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tax_superkingdom 1

  • Viruses · 1 ✖

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 1 ✖

bioproject 1

  • PRJNA896554 · 1 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3421930 3421930 PRJNA896554_P_NODE_21143_length_1730_cov_302.756789_g16893_i0 PRJNA896554 21143 1730 302.756789 5237.6924497 Mus musculus mobilized endogenous polytropic provirus 590745 Viruses Viruses 3014 0   NTclustered gi|1013825125|gb|FJ544578.2| 590745 g16893 i0 98.208 102.005780346821 1730 21 100 2 1 1730 2017 298 Mus musculus mobilized endogenous polytropic provirus clone 51 truncated gag-pol polyprotein (gag) and envelope protein (env) genes, complete cds blastn 176470 3014 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Mus musculus mobilized endogenous polytropic provirus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;