RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA896554", tax_kingdom = "Fungi" and tax_phylum = "Blastocladiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Blastocladiomycota · 6 ✖

tax_kingdom 1

  • Fungi · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA896554 · 6 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8522331 8522331 PRJNA896554_P_NODE_108587_length_312_cov_1.288703_g101047_i0 PRJNA896554 108587 312 1.288703 4.02075336 Paraphysoderma sedebokerense 1500003 Fungi Fungi 125 8.210000000000001e-33   NR KAI9140992.1 1500003 g101047 i0 60.2 10.2019230769231 108 38 99 2 309 1 12 119 KAI9140992.1 hypothetical protein BKA69DRAFT_1076612 [Paraphysoderma sedebokerense] diamond 3183 125 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Physodermatomycetes Physodermatales Physodermataceae Paraphysoderma Paraphysoderma sedebokerense
15271734 15271734 PRJNA896554_P_NODE_50052_length_670_cov_2.319933_g42640_i0 PRJNA896554 50052 670 2.319933 15.5435511 Allomyces macrogynus ATCC 38327 578462 Fungi Fungi 299 5.98e-100   NR KNE68240.1 578462 g42640 i0 72.6 8.42686567164179 208 56 93.1 1 661 38 10 216 KNE68240.1 60S ribosomal protein L1-B [Allomyces macrogynus ATCC 38327] diamond 5646 299 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Blastocladiaceae Allomyces Allomyces macrogynus
21271670 21271670 PRJNA896554_P_NODE_119357_length_292_cov_1.406393_g111817_i0 PRJNA896554 119357 292 1.406393 4.10666756 Paraphysoderma sedebokerense 1500003 Fungi Fungi 149 2.45e-39   NR KAI9142193.1 1500003 g111817 i0 71.9 2.95890410958904 96 27 98.6 0 290 3 386 481 KAI9142193.1 P-loop containing nucleoside triphosphate hydrolase protein [Paraphysoderma sedebokerense] diamond 864 149 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Physodermatomycetes Physodermatales Physodermataceae Paraphysoderma Paraphysoderma sedebokerense
26960550 26960550 PRJNA896554_P_NODE_140702_length_262_cov_1.222222_g133162_i0 PRJNA896554 140702 262 1.222222 3.20222164 Paraphysoderma sedebokerense 1500003 Fungi Fungi 93.6 5.54e-20   NR KAI9139049.1 1500003 g133162 i0 59.3 0.984732824427481 86 28 98.5 2 3 260 117 195 KAI9139049.1 chaperonin Cpn60/TCP-1 family [Paraphysoderma sedebokerense] diamond 258 93.6 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Physodermatomycetes Physodermatales Physodermataceae Paraphysoderma Paraphysoderma sedebokerense
32142114 32142114 PRJNA896554_P_NODE_150038_length_251_cov_0.865169_g142498_i0 PRJNA896554 150038 251 0.865169 2.17157419 Coelomomyces lativittatus 945690 Fungi Fungi 63.9 1.41e-9   NR KAJ1518241.1 945690 g142498 i0 44.3 0.944223107569721 79 40 94.4 2 3 239 567 641 KAJ1518241.1 hypothetical protein HMI55_001117 [Coelomomyces lativittatus] diamond 237 63.9 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Coelomomycetaceae Coelomomyces Coelomomyces lativittatus
32624035 32624035 PRJNA896554_P_NODE_86920_length_372_cov_0.916388_g79380_i0 PRJNA896554 86920 372 0.916388 3.40896336 Eukaryota 2759 Fungi Fungi 124 8.109999999999999e-31   NR KAJ3364053.1 64505 g79380 i0 54.7 9.37096774193548 117 50 92.7 2 345 1 85 200 KAJ3364053.1 protein phosphatase 2A regulatory subunit cdc55 [Allomyces javanicus] diamond 3486 125 0.992 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Blastocladiaceae Allomyces Allomyces javanicus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;