RNAquarium Metadata Server
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contig_metadata

8 rows where bioproject = "PRJNA896554", tax_kingdom = "Bacillati" and tax_phylum = "Mycoplasmatota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 8 ✖

tax_kingdom 1

  • Bacillati · 8 ✖

bioproject 1

  • PRJNA896554 · 8 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
870974 870974 PRJNA896554_P_NODE_170341_length_243_cov_0.905882_g162801_i0 PRJNA896554 170341 243 0.905882 2.20129326 Malacoplasma penetrans 28227 Bacteria Bacteria 62.1 3.64e-5   NTclustered gi|47118307|dbj|BA000026.2| 272633 g162801 i0 92.857 0.172839506172839 42 3 17 0 197 238 511333 511292 Mycoplasma penetrans HF-2 DNA, complete genome blastn 42 62.1 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Mycoplasmoidaceae Malacoplasma Malacoplasma penetrans
2519418 2519418 PRJNA896554_P_NODE_169922_length_243_cov_0.905882_g162382_i0 PRJNA896554 169922 243 0.905882 2.20129326 Mesomycoplasma 2923352 Bacteria Bacteria 449 6.65e-122   NTclustered gi|1720621726|gb|CP035041.1| 2100 g162382 i0 100 35.6172839506173 243 0 100 0 1 243 709960 710202 Mesomycoplasma hyorhinis strain JF5820 chromosome, complete genome blastn 8655 449 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mesomycoplasma Mesomycoplasma hyorhinis
2519472 2519472 PRJNA896554_P_NODE_66522_length_480_cov_2.624079_g58982_i0 PRJNA896554 66522 480 2.624079 12.5955792 Mesomycoplasma 2923352 Bacteria Bacteria 876 0   NTclustered gi|2713084492|gb|CP150431.1| 2100 g58982 i0 99.791 32.4604166666667 478 0 99 1 1 478 671925 672401 Mesomycoplasma hyorhinis strain Nahrain chromosome blastn 15581 876 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mesomycoplasma Mesomycoplasma hyorhinis
7621765 7621765 PRJNA896554_P_NODE_136366_length_267_cov_1.984536_g128826_i0 PRJNA896554 136366 267 1.984536 5.29871112 Mesomycoplasma 2923352 Bacteria Bacteria 494 3.38e-135   NTclustered gi|1720621726|gb|CP035041.1| 2100 g128826 i0 100 15.9213483146067 267 0 100 0 1 267 643769 644035 Mesomycoplasma hyorhinis strain JF5820 chromosome, complete genome blastn 4251 494 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mesomycoplasma Mesomycoplasma hyorhinis
15271633 15271633 PRJNA896554_P_NODE_131452_length_274_cov_1.522388_g123912_i0 PRJNA896554 131452 274 1.522388 4.17134312 Mesomycoplasma 2923352 Bacteria Bacteria 507 4.47e-139   NTclustered gi|1720621726|gb|CP035041.1| 2100 g123912 i0 100 15.014598540146 274 0 100 0 1 274 643405 643678 Mesomycoplasma hyorhinis strain JF5820 chromosome, complete genome blastn 4114 507 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mesomycoplasma Mesomycoplasma hyorhinis
22921352 22921352 PRJNA896554_P_NODE_144238_length_257_cov_1.913043_g136698_i0 PRJNA896554 144238 257 1.913043 4.91652051 Mesomycoplasma 2923352 Bacteria Bacteria 475 1.1699999999999999e-129   NTclustered gi|1720621726|gb|CP035041.1| 2100 g136698 i0 100 48.4241245136187 257 0 100 0 1 257 775303 775047 Mesomycoplasma hyorhinis strain JF5820 chromosome, complete genome blastn 12445 475 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mesomycoplasma Mesomycoplasma hyorhinis
30498035 30498035 PRJNA896554_P_NODE_160693_length_247_cov_0.885057_g153153_i0 PRJNA896554 160693 247 0.885057 2.18609079 Mycoplasmopsis arginini 2094 Bacteria Bacteria 51.2 1.11e-5   NR MDI3350138.1 2094 g153153 i0 95.5 0.267206477732794 22 1 26.7 0 122 187 41 62 MDI3350138.1 hypothetical protein [Mycoplasmopsis arginini] diamond 66 51.2 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis arginini
31105916 31105916 PRJNA896554_P_NODE_176895_length_235_cov_2.876543_g169355_i0 PRJNA896554 176895 235 2.876543 6.75987605 root 1 Root_unresolved Root_unresolved 130 1.41e-33   NR WP_206602619.1 2094 g169355 i0 89 89.463829787234 73 8 93.2 0 15 233 321 393 WP_206602619.1 cbb3-type cytochrome c oxidase subunit I [Mycoplasmopsis arginini] diamond 21024 130 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis arginini

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;