RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA896554", tax_clade = "delta/epsilon subdivisions" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 2 ✖

tax_clade 1

  • delta/epsilon subdivisions · 2 ✖

bioproject 1

  • PRJNA896554 · 2 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
24195286 24195286 PRJNA896554_P_NODE_149179_length_251_cov_1.825843_g141639_i0 PRJNA896554 149179 251 1.825843 4.58286593 Pseudomonadati 3379134 Bacteria Bacteria 459 1.1499999999999996e-124   NTclustered gi|330717318|gb|JF833491.1| 34034 g141639 i0 99.602 99.9800796812749 251 1 100 0 1 251 518 768 Uncultured delta proteobacterium clone A169 16S ribosomal RNA gene, partial sequence blastn 25095 459 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
30695246 30695246 PRJNA896554_P_NODE_151093_length_251_cov_0.865169_g143553_i0 PRJNA896554 151093 251 0.865169 2.17157419 Pseudomonadati 3379134 Bacteria Bacteria 100 7.529999999999999e-23   NR OGQ09132.1 1797848 g143553 i0 58 7.79282868525896 81 34 96.8 0 1 243 100 180 OGQ09132.1 MAG: hypothetical protein A2138_11965 [Deltaproteobacteria bacterium RBG_16_71_12] diamond 1956 100 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium RBG_16_71_12

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;