RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA893346" and tax_phylum = "Thermodesulfobacteriota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA893346 · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4696485 4696485 PRJNA893346_P_NODE_20544_length_340_cov_1.224719_g20055_i0 PRJNA893346 20544 340 1.224719 4.1640446 Thermodesulfobacterium geofontis 1295609 Bacteria Bacteria 52.8 0.032   NTclustered gi|334901311|gb|CP002829.1| 795359 g20055 i0 100 0.0823529411764706 28 0 8 0 275 302 1340340 1340367 Thermodesulfobacterium geofontis OPF15, complete genome blastn 28 52.8 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Thermodesulfobacteria Thermodesulfobacteriales Thermodesulfobacteriaceae Thermodesulfobacterium Thermodesulfobacterium geofontis
12347329 12347329 PRJNA893346_P_NODE_30330_length_269_cov_1.729592_g29840_i0 PRJNA893346 30330 269 1.729592 4.65260248 Smithellaceae bacterium 2964540 Bacteria Bacteria 52.8 0.025   NTclustered gi|2626216295|emb|OY821638.1| 2964540 g29840 i0 100 0.104089219330855 28 0 10 0 170 197 1459386 1459359 MAG: Smithellaceae bacterium isolate 7d888188-1d27-4603-a379-950c855845c6 genome assembly, chromosome: 1 blastn 28 52.8 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Syntrophia Syntrophales Smithellaceae   Smithellaceae bacterium
29842219 29842219 PRJNA893346_P_NODE_35911_length_247_cov_0.885057_g35421_i0 PRJNA893346 35911 247 0.885057 2.18609079 Pseudomonadati 3379134 Bacteria Bacteria 58.9 7.38e-8   NR WP_011341071.1 19 g35421 i0 50 3.04858299595142 62 29 75.3 1 4 189 205 264 WP_011341071.1 ADP-ribosylglycohydrolase family protein [Syntrophotalea carbinolica] diamond 753 59.3 0.993254637436762 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Desulfuromonadales Syntrophotaleaceae Syntrophotalea Syntrophotalea carbinolica
29897758 29897758 PRJNA893346_P_NODE_36691_length_246_cov_0.890173_g36201_i0 PRJNA893346 36691 246 0.890173 2.18982558 Desulfuromusa sp. 2614228 Bacteria Bacteria 44.7 0.00809   NR MEE4252576.1 2614228 g36201 i0 33.3 1.53658536585366 63 40 76.8 1 240 52 397 457 MEE4252576.1 asparagine--tRNA ligase [Desulfuromusa sp.] diamond 378 44.7 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Desulfuromonadales Geopsychrobacteraceae Desulfuromusa Desulfuromusa sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;