RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA893346" and tax_phylum = "Olpidiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Olpidiomycota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA893346 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5971273 5971273 PRJNA893346_P_NODE_20125_length_343_cov_2.274074_g19636_i0 PRJNA893346 20125 343 2.274074 7.80007382 Eukaryota 2759 Fungi Fungi 177 6.62e-50   NR BAL15351.1 278681 g19636 i0 81.6 7.97667638483965 114 21 99.7 0 342 1 432 545 BAL15351.1 translation elongation factor 2, partial [Olpidium bornovanus] diamond 2736 177 1 Eukaryota Opisthokonta Fungi Olpidiomycota Olpidiomycetes Olpidiales Olpidiaceae Olpidium Olpidium bornovanus
18719820 18719820 PRJNA893346_P_NODE_32815_length_253_cov_2.016667_g32325_i0 PRJNA893346 32815 253 2.016667 5.10216751 Olpidium bornovanus 278681 Fungi Fungi 153 1.15e-41   NR BAL15351.1 278681 g32325 i0 90.5 1.99209486166008 84 8 99.6 0 253 2 377 460 BAL15351.1 translation elongation factor 2, partial [Olpidium bornovanus] diamond 504 153 1 Eukaryota Opisthokonta Fungi Olpidiomycota Olpidiomycetes Olpidiales Olpidiaceae Olpidium Olpidium bornovanus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;