RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA893346" and tax_kingdom = "Fusobacteriati"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 7 ✖

bioproject 1

  • PRJNA893346 · 7 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5071356 5071356 PRJNA893346_P_NODE_35304_length_248_cov_0.880000_g34814_i0 PRJNA893346 35304 248 0.88 2.1824 Cetobacterium 180162 Bacteria Bacteria 453 5.2600000000000005e-123   NTclustered gi|2666488225|gb|CP143319.1| 188913 g34814 i0 99.597 4.13306451612903 248 1 100 0 1 248 488804 489051 Cetobacterium somerae strain ceto chromosome, complete genome blastn 1025 453 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae
6347290 6347290 PRJNA893346_P_NODE_25505_length_301_cov_0.964912_g25015_i0 PRJNA893346 25505 301 0.964912 2.90438512 Cetobacterium 180162 Bacteria Bacteria 403 6.71e-108   NTclustered gi|2666488225|gb|CP143319.1| 188913 g25015 i0 91.03 8.48172757475083 301 24 100 2 1 301 1956024 1955727 Cetobacterium somerae strain ceto chromosome, complete genome blastn 2553 403 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae
10171828 10171828 PRJNA893346_P_NODE_27508_length_287_cov_1.373832_g27018_i0 PRJNA893346 27508 287 1.373832 3.94289784 uncultured Cetobacterium sp. 527638 Bacteria Bacteria 170 1.08e-46   NR WP_294094044.1 527638 g27018 i0 98.8 0.888501742160279 85 1 88.9 0 1 255 843 927 WP_294094044.1 EAL domain-containing protein [uncultured Cetobacterium sp.] diamond 255 170 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium uncultured Cetobacterium sp.
12347412 12347412 PRJNA893346_P_NODE_33650_length_251_cov_0.865169_g33160_i0 PRJNA893346 33650 251 0.865169 2.17157419 Cetobacterium somerae 188913 Bacteria Bacteria 193 1.28e-44   NTclustered gi|2201062197|gb|CP092519.1| 188913 g33160 i0 80.972 4.94422310756972 247 43 98 4 7 251 1723428 1723184 Cetobacterium somerae strain CS2105-BJ chromosome, complete genome blastn 1241 193 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae
24194768 24194768 PRJNA893346_P_NODE_18419_length_360_cov_1.341463_g17930_i0 PRJNA893346 18419 360 1.341463 4.8292668 Cetobacterium 180162 Bacteria Bacteria 525 1.6699999999999996e-144   NTclustered gi|2666488225|gb|CP143319.1| 188913 g17930 i0 93.036 4.98611111111111 359 25 99 0 1 359 1955673 1955315 Cetobacterium somerae strain ceto chromosome, complete genome blastn 1795 525 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae
29045233 29045233 PRJNA893346_P_NODE_31548_length_261_cov_1.638298_g31058_i0 PRJNA893346 31548 261 1.638298 4.27595778 unclassified Cetobacterium 2630983 Bacteria Bacteria 115 2.55e-30   NR WP_047383605.1 2630983 g31058 i0 89.8 2.03448275862069 59 6 67.8 0 1 177 134 192 WP_047383605.1 MULTISPECIES: uracil-DNA glycosylase family protein [unclassified Cetobacterium] diamond 531 115 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium  
32363727 32363727 PRJNA893346_P_NODE_22439_length_324_cov_1.131474_g21950_i0 PRJNA893346 22439 324 1.131474 3.66597576 Cetobacterium sp. ZOR 2071632 Bacteria Bacteria 193 2.45e-58   NR WP_047393843.1 1339239 g21950 i0 87.7 0.981481481481482 106 13 98.1 0 320 3 49 154 WP_047393843.1 SEC-C metal-binding domain-containing protein [Cetobacterium sp. ZOR0034] diamond 318 193 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium sp. ZOR0034

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;