RNAquarium Metadata Server
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contig_metadata

8 rows where bioproject = "PRJNA893346", tax_clade = "Sar" and tax_phylum = "Endomyxa"

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tax_superkingdom 1

tax_phylum 1

  • Endomyxa · 8 ✖

tax_clade 1

bioproject 1

  • PRJNA893346 · 8 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
19995057 19995057 PRJNA893346_P_NODE_34076_length_250_cov_0.870056_g33586_i0 PRJNA893346 34076 250 0.870056 2.17514 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 154 6.42e-45   NR CEO96617.1 37360 g33586 i0 86.6 6.888 82 11 98.4 0 248 3 61 142 CEO96617.1 hypothetical protein PBRA_005226 [Plasmodiophora brassicae] diamond 1722 154 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
27372017 27372017 PRJNA893346_P_NODE_37403_length_245_cov_0.895349_g36913_i0 PRJNA893346 37403 245 0.895349 2.19360505 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 55.5 1.2e-6   NR CEO99582.1 37360 g36913 i0 43.4 1.01632653061224 83 34 99.2 4 245 3 153 224 CEO99582.1 hypothetical protein PBRA_007315 [Plasmodiophora brassicae] diamond 249 55.5 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
27695494 27695494 PRJNA893346_P_NODE_10944_length_474_cov_4.107232_g10460_i0 PRJNA893346 10944 474 4.107232 19.46827968 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 108 6.0700000000000006e-27   NR SPQ93437.1 37360 g10460 i0 55.8 6.2025316455696196 104 46 65.8 0 433 122 33 136 SPQ93437.1 unnamed protein product [Plasmodiophora brassicae] diamond 2940 108 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
28508414 28508414 PRJNA893346_P_NODE_34127_length_250_cov_0.870056_g33637_i0 PRJNA893346 34127 250 0.870056 2.17514 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 59.7 2.46e-9   NR SPQ97290.1 37360 g33637 i0 45.3 0.768 64 35 76.8 0 192 1 20 83 SPQ97290.1 unnamed protein product [Plasmodiophora brassicae] diamond 192 59.7 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
28571431 28571431 PRJNA893346_P_NODE_12027_length_452_cov_2.110818_g11542_i0 PRJNA893346 12027 452 2.110818 9.54089736 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 73.9 5.94e-14   NR SPQ97290.1 37360 g11542 i0 44.3 0.524336283185841 79 44 52.4 0 29 265 20 98 SPQ97290.1 unnamed protein product [Plasmodiophora brassicae] diamond 237 73.9 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
29140083 29140083 PRJNA893346_P_NODE_14009_length_417_cov_1.113372_g13522_i0 PRJNA893346 14009 417 1.113372 4.64276124 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 127 3.11e-31   NR CEO95180.1 37360 g13522 i0 49.6 1 139 68 100 1 417 1 374 510 CEO95180.1 hypothetical protein PBRA_003946 [Plasmodiophora brassicae] diamond 417 127 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
30790049 30790049 PRJNA893346_P_NODE_36714_length_246_cov_0.890173_g36224_i0 PRJNA893346 36714 246 0.890173 2.18982558 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 129 3.36e-34   NR CEP01219.1 37360 g36224 i0 74.1 82.9756097560976 81 20 98.8 1 245 3 156 235 CEP01219.1 hypothetical protein PBRA_001825 [Plasmodiophora brassicae] diamond 20412 130 0.992307692307692 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
32592763 32592763 PRJNA893346_P_NODE_9219_length_520_cov_1.646532_g8736_i0 PRJNA893346 9219 520 1.646532 8.5619664 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 181 8.21e-51   NR CEP03425.1 37360 g8736 i0 74.8 36.3173076923077 115 29 66.3 0 346 2 24 138 CEP03425.1 hypothetical protein PBRA_003185 [Plasmodiophora brassicae] diamond 18885 182 0.994505494505495 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;