RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA893346", tax_clade = "PVC group" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 3 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJNA893346 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27245220 27245220 PRJNA893346_P_NODE_29943_length_272_cov_1.155779_g29453_i0 PRJNA893346 29943 272 1.155779 3.14371888 Verrucomicrobiales bacterium 2026801 Bacteria Bacteria 57.4 3.77e-7   NR HAE18699.1 2026801 g29453 i0 36 3.92647058823529 89 53 98.2 2 269 3 426 510 HAE18699.1 hypothetical protein [Verrucomicrobiales bacterium] diamond 1068 57.4 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales     Verrucomicrobiales bacterium
27695501 27695501 PRJNA893346_P_NODE_35844_length_247_cov_0.885057_g35354_i0 PRJNA893346 35844 247 0.885057 2.18609079 Pseudomonadati 3379134 Bacteria Bacteria 45.1 0.00592   NR MDA1274163.1 2026799 g35354 i0 43.1 2.22267206477733 58 29 68 2 59 226 60 115 MDA1274163.1 hypothetical protein [Verrucomicrobiota bacterium] diamond 549 45.1 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
31035374 31035374 PRJNA893346_P_NODE_25555_length_300_cov_1.647577_g25065_i0 PRJNA893346 25555 300 1.647577 4.942731 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 44.3 0.0134   NR MEI6341235.1 2026799 g25065 i0 36 0.75 75 39 66 2 205 8 84 158 MEI6341235.1 permease prefix domain 1-containing protein [Verrucomicrobiota bacterium] diamond 225 44.3 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;