RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA893346" and tax_clade = "Apusozoa"

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analysis 2

tax_superkingdom 1

tax_clade 1

  • Apusozoa · 6 ✖

bioproject 1

  • PRJNA893346 · 6 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
867990 867990 PRJNA893346_P_NODE_17601_length_369_cov_1.212838_g17112_i0 PRJNA893346 17601 369 1.212838 4.47537222 Catacumbia lutetiensis 2925415 Root_unresolved Root_unresolved 143 2.02e-29   NTclustered gi|2206682166|gb|OM966639.1| 2925415 g17112 i0 90 28.0379403794038 110 11 30 0 1 110 5287 5178 Catacumbia lutetiensis strain ORSAYFEB19APU2 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 10346 143 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Catacumbia Catacumbia lutetiensis
12346829 12346829 PRJNA893346_P_NODE_11710_length_458_cov_1.600000_g11225_i0 PRJNA893346 11710 458 1.6 7.328 Zygnematophyceae 131209 Root_unresolved Root_unresolved 205 5.49e-64   NR XP_013755608.1 461836 g11225 i0 74.1 29.6724890829694 139 36 91 0 455 39 83 221 XP_013755608.1 40S ribosomal protein [Thecamonas trahens ATCC 50062] diamond 13590 206 0.995145631067961 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
16170579 16170579 PRJNA893346_P_NODE_14633_length_407_cov_1.535928_g14145_i0 PRJNA893346 14633 407 1.535928 6.25122696 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 110 2.67e-26   NR XP_013755573.1 461836 g14145 i0 41.2 1.93857493857494 131 76 95.8 1 391 2 168 298 XP_013755573.1 cysteine protease CP19 [Thecamonas trahens ATCC 50062] diamond 789 110 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
21270069 21270069 PRJNA893346_P_NODE_26037_length_297_cov_1.022321_g25547_i0 PRJNA893346 26037 297 1.022321 3.03629337 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 141 1.73e-36   NR XP_013762907.1 461836 g25547 i0 73.5 5.90909090909091 98 26 99 0 296 3 293 390 XP_013762907.1 elongation factor 2 [Thecamonas trahens ATCC 50062] diamond 1755 141 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
26612273 26612273 PRJNA893346_P_NODE_33681_length_251_cov_0.865169_g33191_i0 PRJNA893346 33681 251 0.865169 2.17157419 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 42.7 0.0188   NR XP_013759878.1 461836 g33191 i0 54.3 0.418326693227092 35 16 41.8 0 106 2 5 39 XP_013759878.1 calponin [Thecamonas trahens ATCC 50062] diamond 105 42.7 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
32679092 32679092 PRJNA893346_P_NODE_6300_length_643_cov_1.284211_g5834_i0 PRJNA893346 6300 643 1.284211 8.25747673 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 65.9 1.84e-8   NR XP_013757898.1 461836 g5834 i0 28.1 0.779160186625194 167 102 77 7 109 603 3045 3195 XP_013757898.1 uncharacterized protein AMSG_05495 [Thecamonas trahens ATCC 50062] diamond 501 65.9 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;