RNAquarium Metadata Server
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contig_metadata

9 rows where bioproject = "PRJNA891846", tax_phylum = "Negarnaviricota" and tax_superkingdom = "Viruses"

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tax_superkingdom 1

  • Viruses · 9 ✖

tax_phylum 1

  • Negarnaviricota · 9 ✖

tax_kingdom 1

bioproject 1

  • PRJNA891846 · 9 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4695260 4695260 PRJNA891846_P_NODE_18624_length_353_cov_0.864286_g18405_i0 PRJNA891846 18624 353 0.864286 3.05092958 Orthoavulavirus javaense 3051375 Viruses Viruses 630 3.369999999999999e-176   NTclustered gi|218136423|gb|FJ436304.1| 2560319 g18405 i0 98.867 99.9830028328612 353 4 100 0 1 353 1251 899 Newcastle disease virus strain FJ/1/85/Ch, complete genome blastn 35294 630 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Paramyxoviridae Orthoavulavirus Orthoavulavirus javaense
6347095 6347095 PRJNA891846_P_NODE_19345_length_346_cov_1.439560_g19126_i0 PRJNA891846 19345 346 1.43956 4.9808776 root 1 Root_unresolved Root_unresolved 634 2.5599999999999996e-177   NTclustered gi|2649349941|gb|OR995580.1| 11276 g19126 i0 99.711 100 346 1 100 0 1 346 6877 7222 Mutant Vesicular stomatitis virus clone recombinant VSVdM51-RBD, complete genome blastn 34600 634 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae Vesiculovirus Vesicular stomatitis virus
7621149 7621149 PRJNA891846_P_NODE_31646_length_272_cov_1.326633_g31427_i0 PRJNA891846 31646 272 1.326633 3.60844176 root 1 Root_unresolved Root_unresolved 497 2.67e-136   NTclustered gi|27447413|gb|AY102920.1| 11276 g31427 i0 99.632 100 272 1 100 0 1 272 833 562 Vesicular stomatitis virus serotype Indiana panhandle-type defective interfering particle Ind-ST blastn 27200 497 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae Vesiculovirus Vesicular stomatitis virus
13996918 13996918 PRJNA891846_P_NODE_1011_length_1290_cov_31.663106_g915_i0 PRJNA891846 1011 1290 31.663106 408.4540674 root 1 Root_unresolved Root_unresolved 2383 0   NTclustered gi|2232046819|gb|MW306665.1| 11276 g915 i0 100 99.9410852713178 1290 0 100 0 1 1290 1349 60 Vesicular stomatitis virus isolate M Delta 51, complete genome blastn 128924 2383 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae Vesiculovirus Vesicular stomatitis virus
17444948 17444948 PRJNA891846_P_NODE_13954_length_406_cov_0.840841_g13735_i0 PRJNA891846 13954 406 0.840841 3.41381446 Orthoavulavirus javaense 3051375 Viruses Viruses 732 0   NTclustered gi|1402109993|gb|MH392220.1| 2560319 g13735 i0 99.259 97.8004926108374 405 3 99 0 2 406 1189 785 Avian paramyxovirus 1 isolate poultry/China/04-23/C12/647/2004 matrix protein (M) and fusion protein (F) genes, complete cds blastn 39707 732 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Paramyxoviridae Orthoavulavirus Orthoavulavirus javaense
19094696 19094696 PRJNA891846_P_NODE_595_length_1547_cov_9.400950_g529_i0 PRJNA891846 595 1547 9.40095 145.4326965 root 1 Root_unresolved Root_unresolved 2830 0   NTclustered gi|2649349941|gb|OR995580.1| 11276 g529 i0 99.741 100.922430510666 1546 0 99 1 1 1546 3050 4591 Mutant Vesicular stomatitis virus clone recombinant VSVdM51-RBD, complete genome blastn 156127 2856 0.990896358543417 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae Vesiculovirus Vesicular stomatitis virus
21645282 21645282 PRJNA891846_P_NODE_33977_length_262_cov_1.222222_g33757_i0 PRJNA891846 33977 262 1.222222 3.20222164 root 1 Root_unresolved Root_unresolved 484 1.99e-132   NTclustered gi|2649349941|gb|OR995580.1| 11276 g33757 i0 100 100.003816793893 262 0 100 0 1 262 10531 10792 Mutant Vesicular stomatitis virus clone recombinant VSVdM51-RBD, complete genome blastn 26201 484 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae Vesiculovirus Vesicular stomatitis virus
22920705 22920705 PRJNA891846_P_NODE_30178_length_279_cov_0.922330_g29959_i0 PRJNA891846 30178 279 0.92233 2.5733007 root 1 Root_unresolved Root_unresolved 516 7.58e-142   NTclustered gi|2649349941|gb|OR995580.1| 11276 g29959 i0 100 100 279 0 100 0 1 279 9067 8789 Mutant Vesicular stomatitis virus clone recombinant VSVdM51-RBD, complete genome blastn 27900 516 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae Vesiculovirus Vesicular stomatitis virus
24194707 24194707 PRJNA891846_P_NODE_9459_length_483_cov_1.217073_g9243_i0 PRJNA891846 9459 483 1.217073 5.87846259 root 1 Root_unresolved Root_unresolved 887 0   NTclustered gi|2649349941|gb|OR995580.1| 11276 g9243 i0 99.793 99.8260869565217 483 1 100 0 1 483 7598 8080 Mutant Vesicular stomatitis virus clone recombinant VSVdM51-RBD, complete genome blastn 48216 887 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae Vesiculovirus Vesicular stomatitis virus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;