RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA891846", tax_phylum = "Campylobacterota" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 2 ✖

tax_phylum 1

  • Campylobacterota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA891846 · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14895501 14895501 PRJNA891846_P_NODE_45632_length_242_cov_2.177515_g45412_i0 PRJNA891846 45632 242 2.177515 5.2695863 Campylobacter concisus 199 Bacteria Bacteria 52.8 0.022   NTclustered gi|1935888393|gb|CP049239.1| 199 g45412 i0 100 0.347107438016529 28 0 12 0 63 90 405932 405905 Campylobacter concisus strain P3UCO1 chromosome, complete genome blastn 84 52.8 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter concisus
31612042 31612042 PRJNA891846_P_NODE_16996_length_369_cov_0.763514_g16777_i0 PRJNA891846 16996 369 0.763514 2.81736666 Campylobacter 194 Bacteria Bacteria 78.6 4.5e-14   NR WP_270873904.1 2983821 g16777 i0 85.7 2.04878048780488 42 6 34.1 0 127 2 523 564 WP_270873904.1 reverse transcriptase domain-containing protein [Campylobacter sp. JMF_08 NE1] diamond 756 78.6 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter sp. JMF_08 NE1

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;