RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA891846" and tax_phylum = "Brachiopoda"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Brachiopoda · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA891846 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12346600 12346600 PRJNA891846_P_NODE_4970_length_651_cov_1.482699_g4762_i0 PRJNA891846 4970 651 1.482699 9.65237049 Lingula anatina 7574 Brachiopoda other_Eukaryota 303 1.62e-77   NTclustered gi|919102013|ref|XM_013531934.1| 7574 g4762 i0 75.777 26.1213517665131 611 143 93 5 43 650 1397 789 PREDICTED: Lingula anatina UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit (LOC106156607), mRNA blastn 17005 303 1 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina
29676231 29676231 PRJNA891846_P_NODE_38710_length_249_cov_0.875000_g38490_i0 PRJNA891846 38710 249 0.875 2.17875 Lingula anatina 7574 Brachiopoda other_Eukaryota 49.3 5.41e-5   NR XP_013385629.1 7574 g38490 i0 46.5 1.06024096385542 43 23 51.8 0 87 215 33 75 XP_013385629.1 uncharacterized protein LOC106155376 [Lingula anatina] diamond 264 49.3 1 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina
32585078 32585078 PRJNA891846_P_NODE_28159_length_288_cov_0.781395_g27940_i0 PRJNA891846 28159 288 0.781395 2.2504176 Lingula anatina 7574 Brachiopoda other_Eukaryota 69.3 2.9e-11   NR XP_013382041.1 7574 g27940 i0 50 1.91666666666667 92 36 93.8 2 7 276 1 84 XP_013382041.1 guanine nucleotide-binding protein-like 3 homolog [Lingula anatina] diamond 552 69.3 1 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;