contig_metadata
11 rows where bioproject = "PRJNA890871" and tax_phylum = "Gemmatimonadota"
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| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 865112 | 865112 | PRJNA890871_P_NODE_71501_length_247_cov_1.574713_g71366_i0 | PRJNA890871 | 71501 | 247 | 1.574713 | 3.88954111 | Gemmatirosa kalamazoonensis | 861299 | Bacteria | Bacteria | 69.4 | 2.22e-7 | NTclustered | gi|575456455|gb|CP007128.1| | 861299 | g71366 | i0 | 81.928 | 0.336032388663968 | 83 | 13 | 33 | 2 | 7 | 88 | 2458717 | 2458798 | Gemmatirosa kalamazoonesis strain KBS708, complete genome | blastn | 83 | 69.4 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadia | Gemmatimonadales | Gemmatimonadaceae | Gemmatirosa | Gemmatirosa kalamazoonensis | |
| 2140474 | 2140474 | PRJNA890871_P_NODE_70162_length_248_cov_0.880000_g70027_i0 | PRJNA890871 | 70162 | 248 | 0.88 | 2.1824 | Gemmatirosa kalamazoonensis | 861299 | Bacteria | Bacteria | 381 | 2.519999999999999e-101 | NTclustered | gi|575456455|gb|CP007128.1| | 861299 | g70027 | i0 | 94.355 | 70.6088709677419 | 248 | 14 | 100 | 0 | 1 | 248 | 3905743 | 3905496 | Gemmatirosa kalamazoonesis strain KBS708, complete genome | blastn | 17511 | 381 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadia | Gemmatimonadales | Gemmatimonadaceae | Gemmatirosa | Gemmatirosa kalamazoonensis | |
| 4693390 | 4693390 | PRJNA890871_P_NODE_65484_length_250_cov_0.870056_g65349_i0 | PRJNA890871 | 65484 | 250 | 0.870056 | 2.17514 | Gemmatimonadota bacterium | 2026742 | Bacteria | Bacteria | 173 | 2.04e-48 | NR | MBL8961854.1 | 2026742 | g65349 | i0 | 91.6 | 0.996 | 83 | 7 | 99.6 | 0 | 250 | 2 | 501 | 583 | MBL8961854.1 ABC-2 transporter permease [Gemmatimonadota bacterium] | diamond | 249 | 173 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadota bacterium | |||||
| 5967746 | 5967746 | PRJNA890871_P_NODE_40165_length_282_cov_1.244019_g40030_i0 | PRJNA890871 | 40165 | 282 | 1.244019 | 3.50813358 | Gemmatirosa kalamazoonensis | 861299 | Bacteria | Bacteria | 135 | 2.5100000000000004e-27 | NTclustered | gi|575456455|gb|CP007128.1| | 861299 | g40030 | i0 | 91 | 2.62056737588652 | 100 | 9 | 35 | 0 | 174 | 273 | 4674697 | 4674796 | Gemmatirosa kalamazoonesis strain KBS708, complete genome | blastn | 739 | 135 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadia | Gemmatimonadales | Gemmatimonadaceae | Gemmatirosa | Gemmatirosa kalamazoonensis | |
| 11067665 | 11067665 | PRJNA890871_P_NODE_29349_length_313_cov_2.483333_g29214_i0 | PRJNA890871 | 29349 | 313 | 2.483333 | 7.77283229 | Gemmatimonadaceae bacterium | 2026741 | Bacteria | Bacteria | 110 | 9.96e-28 | NR | MBA3672972.1 | 2026741 | g29214 | i0 | 55.6 | 1.03514376996805 | 108 | 43 | 99.7 | 3 | 2 | 313 | 57 | 163 | MBA3672972.1 hypothetical protein [Gemmatimonadaceae bacterium] | diamond | 324 | 110 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadia | Gemmatimonadales | Gemmatimonadaceae | Gemmatimonadaceae bacterium | ||
| 20369109 | 20369109 | PRJNA890871_P_NODE_80036_length_243_cov_2.200000_g79901_i0 | PRJNA890871 | 80036 | 243 | 2.2 | 5.346 | Gemmatimonas | 173479 | Bacteria | Bacteria | 75 | 4.67e-9 | NTclustered | gi|2874253995|emb|OY970320.1| | 246130 | g79901 | i0 | 86.111 | 14.917695473251 | 72 | 7 | 29 | 2 | 164 | 233 | 515360 | 515290 | MAG: uncultured Gemmatimonadaceae bacterium isolate MFD00031.bin.c.2 genome assembly, chromosome: 1 | blastn | 3625 | 75 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadia | Gemmatimonadales | Gemmatimonadaceae | uncultured Gemmatimonadaceae bacterium | ||
| 27087239 | 27087239 | PRJNA890871_P_NODE_62922_length_251_cov_0.865169_g62787_i0 | PRJNA890871 | 62922 | 251 | 0.865169 | 2.17157419 | Longimicrobium sp. | 2029185 | Bacteria | Bacteria | 72.8 | 3.31e-13 | NR | HEX9940226.1 | 2029185 | g62787 | i0 | 64.4 | 0.537848605577689 | 45 | 16 | 53.8 | 0 | 141 | 7 | 4 | 48 | HEX9940226.1 isochorismatase family cysteine hydrolase [Longimicrobium sp.] | diamond | 135 | 72.8 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Longimicrobiia | Longimicrobiales | Longimicrobiaceae | Longimicrobium | Longimicrobium sp. | |
| 27149920 | 27149920 | PRJNA890871_P_NODE_29202_length_314_cov_1.597510_g29067_i0 | PRJNA890871 | 29202 | 314 | 1.59751 | 5.0161814 | Gemmatimonadales bacterium | 2448054 | Bacteria | Bacteria | 44.3 | 0.0204 | NR | HEU4700501.1 | 2448054 | g29067 | i0 | 32.4 | 0.64968152866242 | 68 | 46 | 65 | 0 | 111 | 314 | 180 | 247 | HEU4700501.1 SAM-dependent chlorinase/fluorinase [Gemmatimonadales bacterium] | diamond | 204 | 44.3 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadia | Gemmatimonadales | Gemmatimonadales bacterium | |||
| 27687775 | 27687775 | PRJNA890871_P_NODE_66184_length_250_cov_0.870056_g66049_i0 | PRJNA890871 | 66184 | 250 | 0.870056 | 2.17514 | Longimicrobium sp. | 2029185 | Bacteria | Bacteria | 115 | 1.18e-28 | NR | HEX8430915.1 | 2029185 | g66049 | i0 | 98.4 | 0.768 | 64 | 1 | 76.8 | 0 | 58 | 249 | 1 | 64 | HEX8430915.1 hypothetical protein [Longimicrobium sp.] | diamond | 192 | 115 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Longimicrobiia | Longimicrobiales | Longimicrobiaceae | Longimicrobium | Longimicrobium sp. | |
| 29613053 | 29613053 | PRJNA890871_P_NODE_52950_length_262_cov_3.010582_g52815_i0 | PRJNA890871 | 52950 | 262 | 3.010582 | 7.88772484 | Gemmatimonadota bacterium | 2026742 | Bacteria | Bacteria | 104 | 2.41e-25 | NR | MBK8249898.1 | 2026742 | g52815 | i0 | 75.7 | 0.801526717557252 | 70 | 17 | 80.2 | 0 | 210 | 1 | 1 | 70 | MBK8249898.1 hypothetical protein [Gemmatimonadota bacterium] | diamond | 210 | 104 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadota bacterium | |||||
| 30718949 | 30718949 | PRJNA890871_P_NODE_27934_length_319_cov_2.764228_g27799_i0 | PRJNA890871 | 27934 | 319 | 2.764228 | 8.81788732 | Gemmatimonadales bacterium | 2448054 | Bacteria | Bacteria | 114 | 6.12e-29 | NR | TVP57081.1 | 2448054 | g27799 | i0 | 52.4 | 4.81504702194357 | 105 | 49 | 97.8 | 1 | 8 | 319 | 30 | 134 | TVP57081.1 MAG: pyridoxamine 5'-phosphate oxidase [Gemmatimonadales bacterium] | diamond | 1536 | 114 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadia | Gemmatimonadales | Gemmatimonadales bacterium |
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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;