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contig_metadata

31 rows where bioproject = "PRJNA890871", tax_kingdom = "Pseudomonadati" and tax_phylum = "Campylobacterota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 31 ✖

tax_kingdom 1

  • Pseudomonadati · 31 ✖

bioproject 1

  • PRJNA890871 · 31 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5967329 5967329 PRJNA890871_P_NODE_25665_length_330_cov_3.369650_g25530_i0 PRJNA890871 25665 330 3.36965 11.119845 Campylobacteraceae bacterium 2268179 Bacteria Bacteria 157 4.629999999999999e-42   NR MDR3346798.1 2268179 g25530 i0 63.6 15.6727272727273 110 40 100 0 1 330 724 833 MDR3346798.1 efflux RND transporter permease subunit [Campylobacteraceae bacterium] diamond 5172 157 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae   Campylobacteraceae bacterium
16166341 16166341 PRJNA890871_P_NODE_12813_length_438_cov_3.153425_g12678_i0 PRJNA890871 12813 438 3.153425 13.8120015 Pseudomonadati 3379134 Bacteria Bacteria 205 2.84e-58   NR WP_167749519.1 1854492 g12678 i0 77.2 13.7808219178082 145 33 99.3 0 2 436 869 1013 WP_167749519.1 efflux RND transporter permease subunit [Sulfurospirillum diekertiae] diamond 6036 207 0.990338164251208 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Sulfurospirillaceae Sulfurospirillum Sulfurospirillum diekertiae
18714995 18714995 PRJNA890871_P_NODE_1335_length_1780_cov_3.846514_g1246_i0 PRJNA890871 1335 1780 3.846514 68.4679492 Arcobacter acticola 1849015 Bacteria Bacteria 58.4 0.004   NTclustered gi|1845963640|gb|CP042652.1| 1849015 g1246 i0 97.059 0.0191011235955056 34 1 2 0 1363 1396 740726 740759 Arcobacter acticola strain KCTC 52212 chromosome, complete genome blastn 34 58.4 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Arcobacter Arcobacter acticola
21266379 21266379 PRJNA890871_P_NODE_39077_length_284_cov_1.412322_g38942_i0 PRJNA890871 39077 284 1.412322 4.01099448 Aliarcobacter cryaerophilus 28198 Bacteria Bacteria 202 2.459999999999999e-47   NTclustered gi|1679706893|gb|CP021072.1| 1032070 g38942 i0 86.631 62.8098591549296 187 19 65 4 43 226 1624132 1623949 Arcobacter cryaerophilus ATCC 43158 strain LMG 9904 genome blastn 17838 202 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Aliarcobacter Aliarcobacter cryaerophilus
21644845 21644845 PRJNA890871_P_NODE_70957_length_247_cov_2.522989_g70822_i0 PRJNA890871 70957 247 2.522989 6.23178283 Bacteria 2 Bacteria Bacteria 457 4.05e-124   NTclustered gi|972488604|gb|CP010480.1| 197 g70822 i0 100 345.008097165992 247 0 100 0 1 247 1666926 1667172 Campylobacter jejuni strain CJ677CC524, complete genome blastn 85217 457 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni
26643896 26643896 PRJNA890871_P_NODE_89301_length_234_cov_2.677019_g89166_i0 PRJNA890871 89301 234 2.677019 6.26422446 Helicobacter pylori 210 Bacteria Bacteria 63.9 2.22e-11   NR GAA6904105.1 210 g89166 i0 55.2 0.743589743589744 58 25 73.1 1 13 183 1 58 GAA6904105.1 hypothetical protein Kyoto207A_2120 [Helicobacter pylori] diamond 174 63.9 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
26834121 26834121 PRJNA890871_P_NODE_18621_length_375_cov_3.543046_g18486_i0 PRJNA890871 18621 375 3.543046 13.2864225 Campylobacter geochelonis 1780362 Bacteria Bacteria 44.3 0.0452   NR WP_075494898.1 1780362 g18486 i0 30.1 0.824 103 66 77.6 4 22 312 104 206 WP_075494898.1 ATP-dependent DNA helicase RecG [Campylobacter geochelonis] diamond 309 44.3 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter geochelonis
26834151 26834151 PRJNA890871_P_NODE_63741_length_251_cov_0.865169_g63606_i0 PRJNA890871 63741 251 0.865169 2.17157419 Sulfurimonas hydrogeniphila 2509341 Bacteria Bacteria 69.7 2.12e-13   NR WP_151900552.1 2509341 g63606 i0 45.2 1.74501992031873 73 40 87.3 0 251 33 15 87 WP_151900552.1 SH3 beta-barrel fold-containing protein [Sulfurimonas hydrogeniphila] diamond 438 69.7 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Sulfurimonadaceae Sulfurimonas Sulfurimonas hydrogeniphila
27023882 27023882 PRJNA890871_P_NODE_90262_length_231_cov_4.170886_g90127_i0 PRJNA890871 90262 231 4.170886 9.63474666 Helicobacter pylori 210 Bacteria Bacteria 58.9 4.24e-9   NR GAA6860517.1 210 g90127 i0 57 1.02597402597403 79 5 64.9 1 228 79 13 91 GAA6860517.1 hypothetical protein Kyoto206A_1350 [Helicobacter pylori] diamond 237 58.9 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
27624421 27624421 PRJNA890871_P_NODE_6444_length_595_cov_4.842912_g6309_i0 PRJNA890871 6444 595 4.842912 28.8153264 Campylobacterota bacterium 2026809 Bacteria Bacteria 47.4 0.014   NR MEA3384486.1 2026809 g6309 i0 26.3 0.670588235294118 133 69 66.1 4 563 171 35 140 MEA3384486.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Campylobacterota bacterium] diamond 399 47.4 1 Bacteria   Pseudomonadati Campylobacterota         Campylobacterota bacterium
28129515 28129515 PRJNA890871_P_NODE_69525_length_248_cov_0.982857_g69390_i0 PRJNA890871 69525 248 0.982857 2.43748536 Desulfurellales bacterium 2482794 Bacteria Bacteria 135 3.85e-36   NR TXH45943.1 2482794 g69390 i0 80.5 0.991935483870968 82 16 99.2 0 247 2 98 179 TXH45943.1 MAG: N4-gp56 family major capsid protein [Desulfurellales bacterium] diamond 246 135 1 Bacteria   Pseudomonadati Campylobacterota Desulfurellia Desulfurellales     Desulfurellales bacterium
28295041 28295041 PRJNA890871_P_NODE_39106_length_284_cov_1.345972_g38971_i0 PRJNA890871 39106 284 1.345972 3.82256048 Pseudomonadati 3379134 Bacteria Bacteria 61.2 2.77e-10   NR GAA9130373.1 210 g38971 i0 75.7 1.36267605633803 37 9 39.1 0 284 174 1 37 GAA9130373.1 hypothetical protein Kyoto190A_1990 [Helicobacter pylori] diamond 387 61.6 0.993506493506494 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
28381979 28381979 PRJNA890871_P_NODE_23146_length_344_cov_2.044280_g23011_i0 PRJNA890871 23146 344 2.04428 7.0323232 Campylobacteraceae bacterium 2268179 Bacteria Bacteria 64.7 2.31e-9   NR MDR0580003.1 2268179 g23011 i0 49.3 0.601744186046512 69 31 56.7 2 145 339 129 197 MDR0580003.1 protein-disulfide reductase DsbD [Campylobacteraceae bacterium] diamond 207 64.7 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae   Campylobacteraceae bacterium
28516191 28516191 PRJNA890871_P_NODE_6827_length_579_cov_4.583004_g6692_i0 PRJNA890871 6827 579 4.583004 26.53559316 Arcobacteraceae 2808963 Bacteria Bacteria 52.8 2.55e-4   NR WP_260896327.1 28198 g6692 i0 28.1 2.67875647668394 139 91 68.4 5 491 96 357 493 WP_260896327.1 hypothetical protein [Aliarcobacter cryaerophilus] diamond 1551 52.8 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Aliarcobacter Aliarcobacter cryaerophilus
29392466 29392466 PRJNA890871_P_NODE_17429_length_385_cov_4.423077_g17294_i0 PRJNA890871 17429 385 4.423077 17.02884645 unclassified Campylobacter 2593542 Bacteria Bacteria 72 9.57e-12   NR WP_169973853.1 2593542 g17294 i0 31.2 0.974025974025974 125 84 97.4 1 377 3 95 217 WP_169973853.1 MULTISPECIES: peptidylprolyl isomerase [unclassified Campylobacter] diamond 375 72 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter  
29486879 29486879 PRJNA890871_P_NODE_54510_length_260_cov_3.010695_g54375_i0 PRJNA890871 54510 260 3.010695 7.827807 Helicobacter pylori 210 Bacteria Bacteria 79.7 1.75e-17   NR GAA8857404.1 210 g54375 i0 59.1 1.31538461538462 66 26 76.2 1 59 256 9 73 GAA8857404.1 hypothetical protein Kyoto154A_2210 [Helicobacter pylori] diamond 342 79.7 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
29589295 29589295 PRJNA890871_P_NODE_5210_length_658_cov_4.634188_g5075_i0 PRJNA890871 5210 658 4.634188 30.49295704 delta/epsilon subdivisions 68525 Bacteria Bacteria 90.1 5.67e-17   NR WP_103648983.1 199 g5075 i0 33.7 5.06534954407295 187 110 82.1 4 116 655 1 180 WP_103648983.1 TolC family protein [Campylobacter concisus] diamond 3333 90.5 0.995580110497237 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter concisus
29613061 29613061 PRJNA890871_P_NODE_85230_length_241_cov_1.660714_g85095_i0 PRJNA890871 85230 241 1.660714 4.00232074 Helicobacter pylori 210 Bacteria Bacteria 42 0.00938   NR GAA6801467.1 210 g85095 i0 60.5 1.07053941908714 43 14 49.8 2 120 1 10 52 GAA6801467.1 hypothetical protein Kyoto200A_2170 [Helicobacter pylori] diamond 258 42 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
29715637 29715637 PRJNA890871_P_NODE_55370_length_259_cov_2.462366_g55235_i0 PRJNA890871 55370 259 2.462366 6.37752794 Pseudomonadati 3379134 Bacteria Bacteria 78.6 9.2e-17   NR MCH3765062.1 195 g55235 i0 81.3 3.25482625482625 48 9 55.6 0 116 259 1 48 MCH3765062.1 cytochrome o ubiquinol oxidase subunit I [Campylobacter coli] diamond 843 79.3 0.991172761664565 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter coli
29739385 29739385 PRJNA890871_P_NODE_19530_length_368_cov_2.850847_g19395_i0 PRJNA890871 19530 368 2.850847 10.49111696 Arcobacteraceae bacterium 2808971 Bacteria Bacteria 55.1 7.1e-6   NR MFA7083201.1 2808971 g19395 i0 33.7 0.72554347826087 89 53 70.9 3 326 66 298 382 MFA7083201.1 hypothetical protein [Arcobacteraceae bacterium] diamond 267 55.1 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae   Arcobacteraceae bacterium
29866029 29866029 PRJNA890871_P_NODE_8451_length_525_cov_5.024336_g8316_i0 PRJNA890871 8451 525 5.024336 26.377764 Aliarcobacter butzleri 28197 Bacteria Bacteria 139 2.6299999999999997e-35   NR WP_237920387.1 28197 g8316 i0 43.7 0.994285714285714 174 91 99.4 2 523 2 271 437 WP_237920387.1 DUF3419 family protein [Aliarcobacter butzleri] diamond 522 139 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Aliarcobacter Aliarcobacter butzleri
30718983 30718983 PRJNA890871_P_NODE_94354_length_197_cov_2.290323_g94219_i0 PRJNA890871 94354 197 2.290323 4.51193631 Helicobacter pylori 210 Bacteria Bacteria 62.8 2.16e-11   NR WP_316480680.1 210 g94219 i0 92.9 0.426395939086294 28 2 42.6 0 13 96 1 28 WP_316480680.1 hypothetical protein [Helicobacter pylori] diamond 84 62.8 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
31256231 31256231 PRJNA890871_P_NODE_71375_length_247_cov_1.724138_g71240_i0 PRJNA890871 71375 247 1.724138 4.25862086 Helicobacter pylori 210 Bacteria Bacteria 65.1 6.39e-12   NR GAA6859275.1 210 g71240 i0 55.6 0.65587044534413 54 24 65.6 0 169 8 6 59 GAA6859275.1 hypothetical protein Kyoto206A_0900 [Helicobacter pylori] diamond 162 65.1 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
31762263 31762263 PRJNA890871_P_NODE_87817_length_238_cov_2.721212_g87682_i0 PRJNA890871 87817 238 2.721212 6.47648456 Helicobacter pylori 210 Bacteria Bacteria 75.5 3.49e-15   NR GAA8857246.1 210 g87682 i0 50.7 0.84453781512605 67 33 84.5 0 238 38 45 111 GAA8857246.1 hypothetical protein Kyoto154A_2180 [Helicobacter pylori] diamond 201 75.5 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
31825370 31825370 PRJNA890871_P_NODE_1797_length_1367_cov_5.940495_g1690_i0 PRJNA890871 1797 1367 5.940495 81.20656665 Arcobacter sp. 1872629 Bacteria Bacteria 77 4.7e-11   NR HFU76602.1 1872629 g1690 i0 23.1 0.72201901975128 329 219 67.2 10 985 68 80 397 HFU76602.1 type II/IV secretion system protein [Arcobacter sp.] diamond 987 77 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Arcobacter Arcobacter sp.
31983652 31983652 PRJNA890871_P_NODE_18638_length_375_cov_2.844371_g18503_i0 PRJNA890871 18638 375 2.844371 10.66639125 Sulfurimonadaceae bacterium 2771476 Bacteria Bacteria 147 2.11e-40   NR MDX9813560.1 2771476 g18503 i0 58.7 1.952 121 50 96.8 0 7 369 1 121 MDX9813560.1 DNA cytosine methyltransferase [Sulfurimonadaceae bacterium] diamond 732 147 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Sulfurimonadaceae   Sulfurimonadaceae bacterium
32078624 32078624 PRJNA890871_P_NODE_1338_length_1776_cov_5.681151_g1248_i0 PRJNA890871 1338 1776 5.681151 100.89724176 Helicobacter didelphidarum 2040648 Bacteria Bacteria 47 0.0113   NR WP_115543723.1 2040648 g1248 i0 27.1 0.447635135135135 85 61 14.4 1 1259 1513 8 91 WP_115543723.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC [Helicobacter didelphidarum] diamond 795 47 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter didelphidarum
32110343 32110343 PRJNA890871_P_NODE_36638_length_288_cov_3.172093_g36503_i0 PRJNA890871 36638 288 3.172093 9.13562784 Aliarcobacter butzleri 28197 Bacteria Bacteria 119 4.78e-29   NR WP_237920387.1 28197 g36503 i0 57.4 0.979166666666667 94 40 97.9 0 5 286 36 129 WP_237920387.1 DUF3419 family protein [Aliarcobacter butzleri] diamond 282 119 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Aliarcobacter Aliarcobacter butzleri
32268671 32268671 PRJNA890871_P_NODE_2518_length_1017_cov_3.156780_g2401_i0 PRJNA890871 2518 1017 3.15678 32.1044526 Aliarcobacter butzleri 28197 Bacteria Bacteria 238 2.13e-73   NR WP_237920388.1 28197 g2401 i0 43.1 0.772861356932153 262 147 77.3 1 172 957 1 260 WP_237920388.1 GNAT family N-acetyltransferase [Aliarcobacter butzleri] diamond 786 238 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Aliarcobacter Aliarcobacter butzleri
32521955 32521955 PRJNA890871_P_NODE_85899_length_241_cov_0.916667_g85764_i0 PRJNA890871 85899 241 0.916667 2.20916747 Helicobacter pylori 210 Bacteria Bacteria 47.4 1.47e-4   NR GAA8950681.1 210 g85764 i0 48.3 0.746887966804979 60 27 74.7 2 226 47 17 72 GAA8950681.1 hypothetical protein Kyoto181A_1580 [Helicobacter pylori] diamond 180 47.4 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
32836639 32836639 PRJNA890871_P_NODE_20980_length_358_cov_1.094737_g20845_i0 PRJNA890871 20980 358 1.094737 3.91915846 Helicobacter pylori 210 Bacteria Bacteria 51.2 5.06e-5   NR GAA9037156.1 210 g20845 i0 92 0.729050279329609 87 7 72.9 0 88 348 27 113 GAA9037156.1 hypothetical protein Kyoto184A_00230 [Helicobacter pylori] diamond 261 51.2 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;