RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA890871", tax_kingdom = "Methanobacteriati" and tax_phylum = "Thermoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Thermoplasmatota · 3 ✖

tax_kingdom 1

  • Methanobacteriati · 3 ✖

bioproject 1

  • PRJNA890871 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7242242 7242242 PRJNA890871_P_NODE_27586_length_321_cov_1.564516_g27451_i0 PRJNA890871 27586 321 1.564516 5.02209636 Methanobacteriati 3366610 Archaea Archaea 145 1.32e-41   NR HPD09029.1 1906667 g27451 i0 64 6.64485981308411 100 36 93.5 0 18 317 68 167 HPD09029.1 2,3-diphosphoglycerate-dependent phosphoglycerate mutase [Methanomassiliicoccales archaeon] diamond 2133 145 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata Methanomassiliicoccales     Methanomassiliicoccales archaeon
28223945 28223945 PRJNA890871_P_NODE_47126_length_270_cov_3.477157_g46991_i0 PRJNA890871 47126 270 3.477157 9.3883239 Candidatus Methanomethylophilaceae archaeon 2517205 Archaea Archaea 55.5 1.11e-6   NR MDD4455232.1 2517205 g46991 i0 42.5 0.888888888888889 80 30 82.2 3 48 269 15 84 MDD4455232.1 hypothetical protein [Candidatus Methanomethylophilaceae archaeon] diamond 240 55.5 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata Methanomassiliicoccales Methanomethylophilaceae   Candidatus Methanomethylophilaceae archaeon
29771105 29771105 PRJNA890871_P_NODE_6311_length_601_cov_5.535985_g6176_i0 PRJNA890871 6311 601 5.535985 33.27126985 Methanomethylophilus sp. 2774294 Archaea Archaea 60.1 1.99e-8   NR MFA7063582.1 2774294 g6176 i0 44.3 0.349417637271215 70 36 34.9 1 312 103 4 70 MFA7063582.1 hypothetical protein [Methanomethylophilus sp.] diamond 210 60.1 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata Methanomassiliicoccales Methanomethylophilaceae Methanomethylophilus Methanomethylophilus sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;