RNAquarium Metadata Server
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contig_metadata

9 rows where bioproject = "PRJNA890871", tax_kingdom = "Bacillati" and tax_phylum = "Mycoplasmatota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 9 ✖

tax_kingdom 1

  • Bacillati · 9 ✖

bioproject 1

  • PRJNA890871 · 9 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3415787 3415787 PRJNA890871_P_NODE_70383_length_248_cov_0.880000_g70248_i0 PRJNA890871 70383 248 0.88 2.1824 Mycoplasma yeatsii 51365 Bacteria Bacteria 398 2.5e-106   NTclustered gi|756767228|gb|CP007520.1| 743967 g70248 i0 95.565 2 248 11 100 0 1 248 165763 165516 Mycoplasma yeatsii GM274B blastn 496 398 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma yeatsii
12721870 12721870 PRJNA890871_P_NODE_23850_length_340_cov_2.176030_g23715_i0 PRJNA890871 23850 340 2.17603 7.398502 Mesomycoplasma 2923352 Bacteria Bacteria 612 1.17e-170   NTclustered gi|1720621726|gb|CP035041.1| 2100 g23715 i0 99.118 384.9 340 3 100 0 1 340 599775 599436 Mesomycoplasma hyorhinis strain JF5820 chromosome, complete genome blastn 130866 612 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mesomycoplasma Mesomycoplasma hyorhinis
21265613 21265613 PRJNA890871_P_NODE_1377_length_1737_cov_3.849159_g1287_i0 PRJNA890871 1377 1737 3.849159 66.85989183 Mycoplasma mycoides 2102 Bacteria Bacteria 58.4 0.004   NTclustered gi|2040364209|gb|CP065574.1| 40477 g1287 i0 89.362 0.0270581462291307 47 3 3 2 1524 1570 697310 697266 Mycoplasma mycoides subsp. capri strain Wi8079 chromosome, complete genome blastn 47 58.4 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma mycoides
21644811 21644811 PRJNA890871_P_NODE_65377_length_250_cov_0.870056_g65242_i0 PRJNA890871 65377 250 0.870056 2.17514 Mesomycoplasma 2923352 Bacteria Bacteria 462 8.83e-126   NTclustered gi|1720621726|gb|CP035041.1| 2100 g65242 i0 100 16 250 0 100 0 1 250 390251 390002 Mesomycoplasma hyorhinis strain JF5820 chromosome, complete genome blastn 4000 462 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mesomycoplasma Mesomycoplasma hyorhinis
28223962 28223962 PRJNA890871_P_NODE_87086_length_240_cov_2.694611_g86951_i0 PRJNA890871 87086 240 2.694611 6.4670664 Mycoplasmopsis arginini 2094 Bacteria Bacteria 46.6 8.68e-4   NR MDI3352151.1 2094 g86951 i0 95 0.25 20 1 25 0 130 189 8 27 MDI3352151.1 hypothetical protein [Mycoplasmopsis arginini] diamond 60 46.6 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis arginini
30277091 30277091 PRJNA890871_P_NODE_79992_length_243_cov_2.347059_g79857_i0 PRJNA890871 79992 243 2.347059 5.70335337 Mycoplasmopsis arginini 2094 Bacteria Bacteria 56.2 1.98e-7   NR MDI3349153.1 2094 g79857 i0 79.3 0.358024691358025 29 6 35.8 0 118 32 11 39 MDI3349153.1 hypothetical protein [Mycoplasmopsis arginini] diamond 87 56.2 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis arginini
30687335 30687335 PRJNA890871_P_NODE_2893_length_919_cov_3.466903_g2772_i0 PRJNA890871 2893 919 3.466903 31.86083857 Candidatus Ureaplasma intestinipullorum 2838770 Bacteria Bacteria 65.5 1.04e-7   NR MBU3831078.1 2838770 g2772 i0 29.2 1.32208922742111 137 90 42.4 4 917 528 751 887 MBU3831078.1 isoleucine--tRNA ligase [Candidatus Ureaplasma intestinipullorum] diamond 1215 65.5 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Mycoplasmoidaceae Ureaplasma Candidatus Ureaplasma intestinipullorum
30845494 30845494 PRJNA890871_P_NODE_3254_length_852_cov_3.632863_g3128_i0 PRJNA890871 3254 852 3.632863 30.95199276 Candidatus Izemoplasmatales bacterium 3018265 Bacteria Bacteria 162 7.47e-41   NR MFA7106457.1 3018265 g3128 i0 38.8 4.70774647887324 291 156 98.9 7 6 848 717 995 MFA7106457.1 DEAD/DEAH box helicase family protein [Candidatus Izemoplasmatales bacterium] diamond 4011 162 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Candidatus Izemoplasmatales     Candidatus Izemoplasmatales bacterium
31509436 31509436 PRJNA890871_P_NODE_19596_length_368_cov_1.586441_g19461_i0 PRJNA890871 19596 368 1.586441 5.83810288 Mycoplasmatota bacterium 2231116 Bacteria Bacteria 158 3.46e-46   NR QWB95836.1 2231116 g19461 i0 62.8 3.95380434782609 121 42 96.2 3 356 3 83 203 QWB95836.1 uracil-DNA glycosylase [Mycoplasmatota bacterium] diamond 1455 158 1 Bacteria   Bacillati Mycoplasmatota         Mycoplasmatota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;