RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA890871" and tax_clade = "sulfur-oxidizing symbionts"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • sulfur-oxidizing symbionts · 2 ✖

bioproject 1

  • PRJNA890871 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28042543 28042543 PRJNA890871_P_NODE_26905_length_324_cov_1.729084_g26770_i0 PRJNA890871 26905 324 1.729084 5.60223216 Sedimenticolaceae 3067276 Bacteria Bacteria 115 2.36e-28   NR WP_087959698.1 54398 g26770 i0 54.5 20.1296296296296 110 47 99.1 1 323 3 34 143 WP_087959698.1 rod shape-determining protein [endosymbiont of Ridgeia piscesae] diamond 6522 115 1 Bacteria sulfur-oxidizing symbionts Pseudomonadati Pseudomonadota Gammaproteobacteria       endosymbiont of Ridgeia piscesae
29147960 29147960 PRJNA890871_P_NODE_6929_length_575_cov_4.057769_g6794_i0 PRJNA890871 6929 575 4.057769 23.33217175 sulfur-oxidizing symbionts 32036 Bacteria Bacteria 48.1 0.00906   NR RDH83874.1 2200906 g6794 i0 27.3 1.50260869565217 161 81 84 3 499 17 230 354 RDH83874.1 MAG: hypothetical protein DIZ80_06990 [endosymbiont of Galathealinum brachiosum] diamond 864 48.5 0.991752577319588 Bacteria sulfur-oxidizing symbionts Pseudomonadati Pseudomonadota Gammaproteobacteria       endosymbiont of Galathealinum brachiosum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;