RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA890871", tax_clade = "Opisthokonta" and tax_phylum = "Platyhelminthes"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 2 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 2 ✖

bioproject 1

  • PRJNA890871 · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3415043 3415043 PRJNA890871_P_NODE_32863_length_300_cov_1.546256_g32728_i0 PRJNA890871 32863 300 1.546256 4.638768 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 507 4.96e-139   NTclustered gi|56757963|gb|AY815390.1| 6182 g32728 i0 97.333 126.21 300 5 100 2 1 300 2139 1843 Schistosoma japonicum SJCHGC01951 protein mRNA, complete cds blastn 37863 507 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
27118509 27118509 PRJNA890871_P_NODE_23022_length_345_cov_1.500000_g22887_i0 PRJNA890871 23022 345 1.5 5.175 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 214 1.22e-64   NR AAX28387.3 6182 g22887 i0 99.1 10 115 1 100 0 1 345 339 453 AAX28387.3 SJCHGC01615 protein, partial [Schistosoma japonicum] diamond 3450 214 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;