RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA890871", tax_clade = "Opisthokonta" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 3 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 3 ✖

bioproject 1

  • PRJNA890871 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26770723 26770723 PRJNA890871_P_NODE_7421_length_557_cov_5.140496_g7286_i0 PRJNA890871 7421 557 5.140496 28.63256272 Rhizophlyctis rosea 64517 Fungi Fungi 47.8 0.00778   NR KAJ3035367.1 64517 g7286 i0 34.3 0.360861759425494 67 37 32.9 2 1 183 100 165 KAJ3035367.1 hypothetical protein HDV00_004047 [Rhizophlyctis rosea] diamond 201 47.8 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophlyctidales Rhizophlyctidaceae Rhizophlyctis Rhizophlyctis rosea
28295049 28295049 PRJNA890871_P_NODE_90526_length_231_cov_2.443038_g90391_i0 PRJNA890871 90526 231 2.443038 5.64341778 Fungi 4751 Fungi Fungi 53.1 6.7e-6   NR TPX41023.1 286115 g90391 i0 53.2 1.77922077922078 47 22 61 0 143 3 220 266 TPX41023.1 hypothetical protein SeMB42_g05764, partial [Synchytrium endobioticum] diamond 411 53.1 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Synchytriales Synchytriaceae Synchytrium Synchytrium endobioticum
32490181 32490181 PRJNA890871_P_NODE_1859_length_1324_cov_5.633893_g1751_i0 PRJNA890871 1859 1324 5.633893 74.59274332 Neocallimastix lanati (nom. inval.) 2767002 Fungi Fungi 74.3 1.62e-10   NR KAG4098962.1 2767002 g1751 i0 33.9 0.394259818731118 174 90 36.3 6 164 643 56 218 KAG4098962.1 hypothetical protein H8356DRAFT_1669702 [Neocallimastix lanati (nom. inval.)] diamond 522 74.3 1 Eukaryota Opisthokonta Fungi Chytridiomycota Neocallimastigomycetes Neocallimastigales Neocallimastigaceae Neocallimastix Neocallimastix lanati (nom. inval.)

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;