RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA890871", tax_clade = "FCB group" and tax_phylum = "Fidelibacterota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Fidelibacterota · 2 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 2 ✖

bioproject 1

  • PRJNA890871 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29203137 29203137 PRJNA890871_P_NODE_92969_length_219_cov_4.219178_g92834_i0 PRJNA890871 92969 219 4.219178 9.23999982 Fidelibacterota bacterium 2026760 Bacteria Bacteria 42 0.0476   NR NQV49262.1 2026760 g92834 i0 35.6 0.616438356164384 45 29 61.6 0 47 181 2 46 NQV49262.1 DMT family transporter [Fidelibacterota bacterium] diamond 135 42 1 Bacteria FCB group Pseudomonadati Fidelibacterota         Fidelibacterota bacterium
30340467 30340467 PRJNA890871_P_NODE_71072_length_247_cov_2.183908_g70937_i0 PRJNA890871 71072 247 2.183908 5.39425276 Fidelibacterota bacterium 2026760 Bacteria Bacteria 85.9 2.92e-18   NR MBO02986.1 2026760 g70937 i0 53.8 2.84210526315789 78 36 94.7 0 5 238 68 145 MBO02986.1 Nin-like protein [Fidelibacterota bacterium] diamond 702 85.9 1 Bacteria FCB group Pseudomonadati Fidelibacterota         Fidelibacterota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;