RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA890871" and tax_clade = "BD1-7 clade"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • BD1-7 clade · 2 ✖

bioproject 1

  • PRJNA890871 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26842077 26842077 PRJNA890871_P_NODE_89761_length_233_cov_2.362500_g89626_i0 PRJNA890871 89761 233 2.3625 5.504625 Pseudomonadati 3379134 Bacteria Bacteria 90.9 3.75e-19   NR CAA0091188.1 2029982 g89626 i0 56.4 6.10300429184549 78 33 99.1 1 1 231 307 384 CAA0091188.1 Uncharacterised protein [BD1-7 clade bacterium] diamond 1422 90.9 1 Bacteria BD1-7 clade Pseudomonadati Pseudomonadota Gammaproteobacteria Cellvibrionales Spongiibacteraceae   BD1-7 clade bacterium
32149877 32149877 PRJNA890871_P_NODE_51698_length_264_cov_1.801047_g51563_i0 PRJNA890871 51698 264 1.801047 4.75476408 Gammaproteobacteria 1236 Bacteria Bacteria 75.5 1.45e-13   NR EAW29627.1 247633 g51563 i0 42.9 1.89772727272727 84 48 95.5 0 255 4 45 128 EAW29627.1 DNA repair protein RecN [marine gamma proteobacterium HTCC2143] diamond 501 75.5 1 Bacteria BD1-7 clade Pseudomonadati Pseudomonadota Gammaproteobacteria Cellvibrionales Spongiibacteraceae   marine gamma proteobacterium HTCC2143

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;