RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA889065", tax_kingdom = "Thermotogati" and tax_superkingdom = "Bacteria"

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tax_phylum 2

analysis 2

tax_superkingdom 1

  • Bacteria · 3 ✖

tax_kingdom 1

  • Thermotogati · 3 ✖

bioproject 1

  • PRJNA889065 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5966586 5966586 PRJNA889065_S_NODE_1405_length_680_cov_11.076923_g1243_i0 PRJNA889065 1405 680 11.076923 75.3230764 Marinitoga aeolica 2809031 Bacteria Bacteria 54.7 0.019   NTclustered gi|2498963055|gb|CP069362.1| 2809031 g1243 i0 100 0.0852941176470588 29 0 4 0 2 30 356986 356958 Marinitoga aeolica strain BP5-C20A chromosome, complete genome blastn 58 54.7 1 Bacteria   Thermotogati Thermotogota Thermotogae Petrotogales Petrotogaceae Marinitoga Marinitoga aeolica
17441613 17441613 PRJNA889065_S_NODE_38414_length_153_cov_1.890909_g38176_i0 PRJNA889065 38414 153 1.890909 2.89309077 Trueperaceae bacterium 2026798 Bacteria Bacteria 243 6.93e-60   NTclustered gi|2621701816|emb|OY759346.1| 2026798 g38176 i0 95.395 375.895424836601 152 7 99 0 1 152 3600977 3601128 MAG: Trueperaceae bacterium isolate dd143a13-9bf8-4812-ba0e-a3cf349d91ff genome assembly, chromosome: 1 blastn 57512 243 1 Bacteria   Thermotogati Deinococcota Deinococci Trueperales Trueperaceae   Trueperaceae bacterium
26738529 26738529 PRJNA889065_S_NODE_10121_length_300_cov_6.696498_g9883_i0 PRJNA889065 10121 300 6.696498 20.089494 Allomeiothermus silvanus 52022 Bacteria Bacteria 49.3 3.71e-4   NR WP_276956074.1 52022 g9883 i0 42.3 3.21 71 33 70 4 67 276 601 664 WP_276956074.1 cation:proton antiporter [Allomeiothermus silvanus] diamond 963 49.3 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Allomeiothermus Allomeiothermus silvanus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;