RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA889065", tax_kingdom = "Pseudomonadati" and tax_phylum = "Thermodesulfobacteriota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 7 ✖

tax_kingdom 1

  • Pseudomonadati · 7 ✖

bioproject 1

  • PRJNA889065 · 7 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
22540102 22540102 PRJNA889065_S_NODE_11978_length_278_cov_1.880851_g11740_i0 PRJNA889065 11978 278 1.880851 5.22876578 Desulfomonile tiedjei 2358 Bacteria Bacteria 56.5 0.002   NTclustered gi|390621545|gb|CP003360.1| 706587 g11740 i0 96.97 0.118705035971223 33 1 12 0 144 176 643474 643442 Desulfomonile tiedjei DSM 6799, complete genome blastn 33 56.5 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfomonilia Desulfomonilales Desulfomonilaceae Desulfomonile Desulfomonile tiedjei
26612173 26612173 PRJNA889065_S_NODE_5321_length_407_cov_5.486264_g5083_i0 PRJNA889065 5321 407 5.486264 22.32909448 uncultured Desulfosarcina sp. 218289 Bacteria Bacteria 44.3 0.0391   NR WP_319405197.1 218289 g5083 i0 48.7 0.545454545454545 39 20 28.7 0 187 71 142 180 WP_319405197.1 SOUL family heme-binding protein [uncultured Desulfosarcina sp.] diamond 222 44.3 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfosarcinaceae Desulfosarcina uncultured Desulfosarcina sp.
27118466 27118466 PRJNA889065_S_NODE_27282_length_185_cov_2.915493_g27044_i0 PRJNA889065 27282 185 2.915493 5.39366205 Candidatus Electrothrix aarhusensis 1859131 Bacteria Bacteria 74.3 1.88e-14   NR RWX46107.1 1859131 g27044 i0 58.6 6.48648648648649 58 24 94.1 0 176 3 137 194 RWX46107.1 carbonic anhydrase [Candidatus Electrothrix aarhusensis] diamond 1200 74.3 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobulbia Desulfobulbales Desulfobulbaceae Candidatus Electrothrix Candidatus Electrothrix aarhusensis
29897640 29897640 PRJNA889065_S_NODE_13551_length_262_cov_2.520548_g13313_i0 PRJNA889065 13551 262 2.520548 6.60383576 Desulfovibrionaceae bacterium 2049043 Bacteria Bacteria 42.7 0.0425   NR MBQ7585975.1 2049043 g13313 i0 31.3 0.950381679389313 83 53 95 1 10 258 2 80 MBQ7585975.1 ABC transporter permease [Desulfovibrionaceae bacterium] diamond 249 42.7 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae   Desulfovibrionaceae bacterium
31224409 31224409 PRJNA889065_S_NODE_1935_length_601_cov_5.482079_g1738_i0 PRJNA889065 1935 601 5.482079 32.94729479 Desulfobacterales bacterium 2044940 Bacteria Bacteria 78.2 1.66e-13   NR MDX9788230.1 2044940 g1738 i0 31.1 2.7603993344426 164 102 78.4 3 587 117 78 237 MDX9788230.1 NRDE family protein [Desulfobacterales bacterium] diamond 1659 78.2 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales     Desulfobacterales bacterium
32173784 32173784 PRJNA889065_S_NODE_13378_length_264_cov_1.457014_g13140_i0 PRJNA889065 13378 264 1.457014 3.84651696 Desulfobacterales bacterium 2044940 Bacteria Bacteria 43.1 0.0322   NR MCJ7747593.1 2044940 g13140 i0 40.4 0.534090909090909 47 28 53.4 0 261 121 215 261 MCJ7747593.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB [Desulfobacterales bacterium] diamond 141 43.1 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales     Desulfobacterales bacterium
32836596 32836596 PRJNA889065_S_NODE_13440_length_263_cov_2.504545_g13202_i0 PRJNA889065 13440 263 2.504545 6.58695335 Desulforhopalus sp. 2099376 Bacteria Bacteria 94.4 1.65e-22   NR NOR22819.1 2099376 g13202 i0 78.9 0.650190114068441 57 12 65 0 93 263 1 57 NOR22819.1 YjbQ family protein [Desulforhopalus sp.] diamond 171 94.4 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobulbia Desulfobulbales Desulfocapsaceae Desulforhopalus Desulforhopalus sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;