RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA889065", tax_kingdom = "Pseudomonadati" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 6 ✖

tax_kingdom 1

  • Pseudomonadati · 6 ✖

bioproject 1

  • PRJNA889065 · 6 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
17441512 17441512 PRJNA889065_S_NODE_1774_length_621_cov_6.513841_g1587_i0 PRJNA889065 1774 621 6.513841 40.45095261 Myxococcales bacterium 2026763 Bacteria Bacteria 256 4.25e-76   NR MCB9640303.1 2026763 g1587 i0 59.6 8.39130434782609 193 78 93.2 0 2 580 761 953 MCB9640303.1 aminomethyl-transferring glycine dehydrogenase [Myxococcales bacterium] diamond 5211 256 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
29834376 29834376 PRJNA889065_S_NODE_2371_length_556_cov_24.727096_g2157_i0 PRJNA889065 2371 556 24.727096 137.48265376 Myxococcota bacterium 2818507 Bacteria Bacteria 127 7.02e-33   NR MFO0727083.1 2818507 g2157 i0 41 1.72661870503597 161 85 83.6 3 504 40 69 225 MFO0727083.1 cyclin-dependent kinase inhibitor 3 family protein [Myxococcota bacterium] diamond 960 127 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
30371890 30371890 PRJNA889065_S_NODE_7412_length_348_cov_1.324590_g7174_i0 PRJNA889065 7412 348 1.32459 4.6095732 Vitiosangium sp. GDMCC 1.1324 2138576 Bacteria Bacteria 94.4 8.76e-20   NR WP_108075257.1 2138576 g7174 i0 44.6 3.66379310344828 112 59 96.6 3 3 338 230 338 WP_108075257.1 CocE/NonD family hydrolase [Vitiosangium sp. GDMCC 1.1324] diamond 1275 94.4 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Vitiosangium Vitiosangium sp. GDMCC 1.1324
31540945 31540945 PRJNA889065_S_NODE_13116_length_266_cov_2.730942_g12878_i0 PRJNA889065 13116 266 2.730942 7.26430572 Myxococcota bacterium 2818507 Bacteria Bacteria 43.5 0.0247   NR MEM6730674.1 2818507 g12878 i0 47.7 0.496240601503759 44 23 49.6 0 199 68 231 274 MEM6730674.1 endonuclease [Myxococcota bacterium] diamond 132 43.5 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
32363616 32363616 PRJNA889065_S_NODE_30599_length_174_cov_1.702290_g30361_i0 PRJNA889065 30599 174 1.70229 2.9619846 Myxococcales bacterium 2026763 Bacteria Bacteria 64.7 2.14e-10   NR MBL8679326.1 2026763 g30361 i0 59.1 1.51724137931034 44 18 75.9 0 160 29 207 250 MBL8679326.1 phytanoyl-CoA dioxygenase family protein [Myxococcales bacterium] diamond 264 64.7 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
32584998 32584998 PRJNA889065_S_NODE_33019_length_167_cov_1.112903_g32781_i0 PRJNA889065 33019 167 1.112903 1.85854801 Myxococcota bacterium 2818507 Bacteria Bacteria 50.1 3.35e-5   NR MFT5686820.1 2818507 g32781 i0 57.5 1.32934131736527 40 17 71.9 0 146 27 254 293 MFT5686820.1 ectoine hydroxylase-related dioxygenase (phytanoyl-CoA dioxygenase family) [Myxococcota bacterium] diamond 222 50.1 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;