RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA889065" and tax_kingdom = "Methanobacteriati"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Methanobacteriati · 3 ✖

bioproject 1

  • PRJNA889065 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4691804 4691804 PRJNA889065_S_NODE_3404_length_487_cov_3.707207_g3176_i0 PRJNA889065 3404 487 3.707207 18.05409809 Natronorubrum daqingense 588898 Archaea Archaea 69.4 4.72e-7   NTclustered gi|1134979927|gb|CP019327.1| 588898 g3176 i0 85.294 0.139630390143737 68 8 14 2 308 374 592885 592951 Natronorubrum daqingense strain JX313, complete sequence blastn 68 69.4 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Natronorubrum Natronorubrum daqingense
26928951 26928951 PRJNA889065_S_NODE_14442_length_255_cov_1.900943_g14204_i0 PRJNA889065 14442 255 1.900943 4.84740465 Candidatus Alkanophaga volatiphilum 2971472 Archaea Archaea 43.1 0.0304   NR MDF2956438.1 2971472 g14204 i0 54.3 0.411764705882353 35 16 41.2 0 5 109 407 441 MDF2956438.1 tRNA U13 pseudouridine synthase TruD [Candidatus Alkanophaga volatiphilum] diamond 105 43.1 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Candidatus Alkanophagales   Candidatus Alkanophaga Candidatus Alkanophaga volatiphilum
30845441 30845441 PRJNA889065_S_NODE_22594_length_204_cov_4.099379_g22356_i0 PRJNA889065 22594 204 4.099379 8.36273316 uncultured Methanobrevibacter sp. 253161 Archaea Archaea 42 0.0435   NR WP_298501950.1 253161 g22356 i0 37 0.794117647058823 54 32 76.5 1 195 40 588 641 WP_298501950.1 KAP family P-loop NTPase fold protein [uncultured Methanobrevibacter sp.] diamond 162 42 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter uncultured Methanobrevibacter sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;