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contig_metadata

31 rows where bioproject = "PRJNA889065", tax_kingdom = "Bacillati" and tax_phylum = "Actinomycetota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 31 ✖

tax_kingdom 1

  • Bacillati · 31 ✖

bioproject 1

  • PRJNA889065 · 31 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4691792 4691792 PRJNA889065_S_NODE_30844_length_173_cov_1.961538_g30606_i0 PRJNA889065 30844 173 1.961538 3.39346074 Brachybacterium faecium 43669 Bacteria Bacteria 274 2.85e-69   NTclustered gi|256558041|gb|CP001643.1| 446465 g30606 i0 95.858 3.71098265895954 169 7 98 0 4 172 133705 133537 Brachybacterium faecium DSM 4810 strain 6-10, complete genome blastn 642 274 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Dermabacteraceae Brachybacterium Brachybacterium faecium
9791295 9791295 PRJNA889065_S_NODE_27048_length_186_cov_2.573427_g26810_i0 PRJNA889065 27048 186 2.573427 4.78657422 Micrococcus yunnanensis 566027 Bacteria Bacteria 344 2.34e-90   NTclustered gi|2506638323|gb|CP125290.1| 566027 g26810 i0 100 199.236559139785 186 0 100 0 1 186 248032 247847 Micrococcus yunnanensis strain TJPT4 chromosome, complete genome blastn 37058 344 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Micrococcus Micrococcus yunnanensis
10170714 10170714 PRJNA889065_S_NODE_12108_length_276_cov_4.068670_g11870_i0 PRJNA889065 12108 276 4.06867 11.2295292 Cutibacterium 1912216 Bacteria Bacteria 505 1.62e-138   NTclustered gi|1446500593|gb|CP031442.1| 1747 g11870 i0 99.638 271.463768115942 276 1 100 0 1 276 57819 58094 Cutibacterium acnes strain KCOM 1315 chromosome, complete genome blastn 74924 505 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes
11066809 11066809 PRJNA889065_S_NODE_12689_length_270_cov_2.814978_g12451_i0 PRJNA889065 12689 270 2.814978 7.6004406 Corynebacterium afermentans 38286 Bacteria Bacteria 475 1.2399999999999999e-129   NTclustered gi|2531253808|gb|CP046530.1| 144184 g12451 i0 100 433.462962962963 257 0 95 0 14 270 640207 640463 Corynebacterium afermentans subsp. lipophilum strain DSM 44282 chromosome, complete genome blastn 117035 475 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium afermentans
11066903 11066903 PRJNA889065_S_NODE_3309_length_492_cov_15.175947_g3082_i0 PRJNA889065 3309 492 15.175947 74.66565924 Actinomycetota bacterium 2900548 Bacteria Bacteria 111 4.74e-25   NR MFM2144769.1 2900548 g3082 i0 52.5 1.23170731707317 101 45 59.8 2 294 1 8 108 MFM2144769.1 hypothetical protein [Actinomycetota bacterium] diamond 606 111 1 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium
12721703 12721703 PRJNA889065_S_NODE_29910_length_176_cov_2.075188_g29672_i0 PRJNA889065 29910 176 2.075188 3.65233088 Dietzia 37914 Bacteria Bacteria 281 1.74e-71   NTclustered gi|2708443468|gb|CP143297.1| 322509 g29672 i0 95.455 335.159090909091 176 8 100 0 1 176 716471 716296 Dietzia kunjamensis strain IITR165 chromosome, complete genome blastn 58988 281 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Dietziaceae Dietzia Dietzia kunjamensis
13996082 13996082 PRJNA889065_S_NODE_20511_length_215_cov_1.575581_g20273_i0 PRJNA889065 20511 215 1.575581 3.38749915 Cutibacterium 1912216 Bacteria Bacteria 398 2.1099999999999997e-106   NTclustered gi|1446500593|gb|CP031442.1| 1747 g20273 i0 100 259.544186046512 215 0 100 0 1 215 55817 55603 Cutibacterium acnes strain KCOM 1315 chromosome, complete genome blastn 55802 398 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes
17819731 17819731 PRJNA889065_S_NODE_21434_length_210_cov_2.449102_g21196_i0 PRJNA889065 21434 210 2.449102 5.1431142 Corynebacterium 1716 Bacteria Bacteria 388 1.24e-103   NTclustered gi|2547417233|gb|CP073096.1| 38304 g21196 i0 100 367.37619047619 210 0 100 0 1 210 790013 789804 Corynebacterium tuberculostearicum strain CTNIH20 chromosome, complete genome blastn 77149 388 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium tuberculostearicum
19093696 19093696 PRJNA889065_S_NODE_30295_length_175_cov_1.393939_g30057_i0 PRJNA889065 30295 175 1.393939 2.43939325 Cutibacterium 1912216 Bacteria Bacteria 324 2.83e-84   NTclustered gi|1446500593|gb|CP031442.1| 1747 g30057 i0 100 299.291428571429 175 0 100 0 1 175 55823 55997 Cutibacterium acnes strain KCOM 1315 chromosome, complete genome blastn 52376 324 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes
24193756 24193756 PRJNA889065_S_NODE_36659_length_157_cov_2.008772_g36421_i0 PRJNA889065 36659 157 2.008772 3.15377204 Streptosporangium 2000 Bacteria Bacteria 54.7 0.004   NTclustered gi|2651931882|gb|CP109068.1| 106412 g36421 i0 100 2.88535031847134 29 0 18 0 22 50 8175848 8175820 Streptosporangium subroseum strain NBC 01811 chromosome, complete genome blastn 453 54.7 1 Bacteria   Bacillati Actinomycetota Actinomycetes Streptosporangiales Streptosporangiaceae Streptosporangium Streptosporangium subroseum
26928957 26928957 PRJNA889065_S_NODE_20322_length_216_cov_1.445087_g20084_i0 PRJNA889065 20322 216 1.445087 3.12138792 Actinomycetota bacterium 2900548 Bacteria Bacteria 54.7 1.55e-6   NR MEP6900930.1 2900548 g20084 i0 82.1 1.72222222222222 39 2 54.2 1 206 90 429 462 MEP6900930.1 molecular chaperone DnaK [Actinomycetota bacterium] diamond 372 54.7 1 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium
27055628 27055628 PRJNA889065_S_NODE_30402_length_175_cov_1.045455_g30164_i0 PRJNA889065 30402 175 1.045455 1.82954625 Actinomycetota bacterium 2900548 Bacteria Bacteria 43.1 0.00975   NR MBS1890054.1 2900548 g30164 i0 73.1 0.445714285714286 26 7 44.6 0 175 98 159 184 MBS1890054.1 hypothetical protein [Actinomycetota bacterium] diamond 78 43.1 1 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium
27087180 27087180 PRJNA889065_S_NODE_13762_length_261_cov_1.055046_g13524_i0 PRJNA889065 13762 261 1.055046 2.75367006 Cutibacterium acnes 1747 Bacteria Bacteria 41.6 0.0294   NR MES9191646.1 1747 g13524 i0 43.9 0.471264367816092 41 23 47.1 0 119 241 20 60 MES9191646.1 DUF1725 domain-containing protein [Cutibacterium acnes] diamond 123 41.6 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes
27126137 27126137 PRJNA889065_S_NODE_11322_length_285_cov_2.851240_g11084_i0 PRJNA889065 11322 285 2.85124 8.126034 root 1 Root_unresolved Root_unresolved 62.8 2.87e-10   NR MES9320413.1 1747 g11084 i0 38.7 1.95789473684211 93 50 97.9 1 281 3 22 107 MES9320413.1 hypothetical protein [Cutibacterium acnes] diamond 558 62.8 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes
27529428 27529428 PRJNA889065_S_NODE_26783_length_187_cov_2.368056_g26545_i0 PRJNA889065 26783 187 2.368056 4.42826472 Cutibacterium acnes 1747 Bacteria Bacteria 50.4 2.72e-5   NR MES8420751.1 1747 g26545 i0 65.8 1.23529411764706 38 13 61 0 118 5 175 212 MES8420751.1 hypothetical protein [Cutibacterium acnes] diamond 231 50.4 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes
27782205 27782205 PRJNA889065_S_NODE_7584_length_344_cov_6.362126_g7346_i0 PRJNA889065 7584 344 6.362126 21.88571344 Micromonospora saelicesensis 285676 Bacteria Bacteria 42.4 0.0175   NR WP_112678839.1 285676 g7346 i0 38 0.436046511627907 50 29 41.9 1 344 201 9 58 WP_112678839.1 hypothetical protein [Micromonospora saelicesensis] diamond 150 42.4 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Micromonospora Micromonospora saelicesensis
27916046 27916046 PRJNA889065_S_NODE_33285_length_166_cov_1.495935_g33047_i0 PRJNA889065 33285 166 1.495935 2.4832521 root 1 Root_unresolved Root_unresolved 52.4 5.03e-6   NR MES6783892.1 1747 g33047 i0 56.1 12.8132530120482 41 18 74.1 0 128 6 131 171 MES6783892.1 reverse transcriptase family protein [Cutibacterium acnes] diamond 2127 52.4 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes
28287021 28287021 PRJNA889065_S_NODE_15566_length_246_cov_2.039409_g15328_i0 PRJNA889065 15566 246 2.039409 5.01694614 Actinomycetota bacterium 2900548 Bacteria Bacteria 40.4 0.0464   NR MBS1890014.1 2900548 g15328 i0 58.6 0.353658536585366 29 12 35.4 0 123 37 32 60 MBS1890014.1 hypothetical protein [Actinomycetota bacterium] diamond 87 40.4 1 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium
28571341 28571341 PRJNA889065_S_NODE_15947_length_243_cov_2.480000_g15709_i0 PRJNA889065 15947 243 2.48 6.0264 Gaiellaceae bacterium 2838783 Bacteria Bacteria 43.5 0.00992   NR HEX5172863.1 2838783 g15709 i0 43.9 0.506172839506173 41 23 50.6 0 199 77 20 60 HEX5172863.1 hypothetical protein [Gaiellaceae bacterium] diamond 123 43.5 1 Bacteria   Bacillati Actinomycetota Thermoleophilia Gaiellales Gaiellaceae   Gaiellaceae bacterium
28571347 28571347 PRJNA889065_S_NODE_27587_length_184_cov_2.609929_g27349_i0 PRJNA889065 27587 184 2.609929 4.80226936 Streptosporangiaceae bacterium NEAU-GS5 2820291 Bacteria Bacteria 41.6 0.0403   NR MBO3752858.1 2820291 g27349 i0 40.4 0.766304347826087 47 26 76.6 1 12 152 76 120 MBO3752858.1 transposase [Streptosporangiaceae bacterium NEAU-GS5] diamond 141 41.6 1 Bacteria   Bacillati Actinomycetota Actinomycetes Streptosporangiales Streptosporangiaceae   Streptosporangiaceae bacterium NEAU-GS5
28823707 28823707 PRJNA889065_S_NODE_12948_length_268_cov_1.808889_g12710_i0 PRJNA889065 12948 268 1.808889 4.84782252 Microlunatus endophyticus 1716077 Bacteria Bacteria 43.1 0.0157   NR WP_188894338.1 1716077 g12710 i0 40.8 0.548507462686567 49 26 54.9 1 113 259 72 117 WP_188894338.1 Fur family transcriptional regulator [Microlunatus endophyticus] diamond 147 43.1 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Microlunatus Microlunatus endophyticus
28918525 28918525 PRJNA889065_S_NODE_4948_length_421_cov_2.806878_g4710_i0 PRJNA889065 4948 421 2.806878 11.81695638 Actinomycetota bacterium 2900548 Bacteria Bacteria 69.7 3.06e-12   NR MBS1889725.1 2900548 g4710 i0 68.2 0.31353919239905 44 14 31.4 0 84 215 19 62 MBS1889725.1 hypothetical protein [Actinomycetota bacterium] diamond 132 69.7 1 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium
29486819 29486819 PRJNA889065_S_NODE_2490_length_547_cov_56.480159_g2273_i0 PRJNA889065 2490 547 56.480159 308.94646973 Actinomycetota bacterium 2900548 Bacteria Bacteria 133 4.09e-34   NR MBM3680260.1 2900548 g2273 i0 45.9 5.09506398537477 157 72 83.9 4 4 462 175 322 MBM3680260.1 malate dehydrogenase [Actinomycetota bacterium] diamond 2787 133 1 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium
29526570 29526570 PRJNA889065_S_NODE_7210_length_353_cov_1.464516_g6972_i0 PRJNA889065 7210 353 1.464516 5.16974148 Streptomyces 1883 Bacteria Bacteria 65.9 4.55e-10   NR WP_018534482.1 2593676 g6972 i0 37.6 3.03399433427762 117 70 99.4 2 1 351 132 245 WP_018534482.1 MULTISPECIES: SIMPL domain-containing protein [unclassified Streptomyces] diamond 1071 65.9 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces  
30277020 30277020 PRJNA889065_S_NODE_20372_length_215_cov_4.133721_g20134_i0 PRJNA889065 20372 215 4.133721 8.88750015 Actinomycetota bacterium 2900548 Bacteria Bacteria 46.2 1.17e-4   NR MBS1889943.1 2900548 g20134 i0 63.9 0.502325581395349 36 13 50.2 0 108 1 2 37 MBS1889943.1 hypothetical protein [Actinomycetota bacterium] diamond 108 46.2 1 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium
31066770 31066770 PRJNA889065_S_NODE_18035_length_229_cov_1.483871_g17797_i0 PRJNA889065 18035 229 1.483871 3.39806459 Agrococcus terreus 574649 Bacteria Bacteria 49.7 1.39e-5   NR WP_344724958.1 574649 g17797 i0 41.7 11.7248908296943 60 35 78.6 0 226 47 13 72 WP_344724958.1 hypothetical protein [Agrococcus terreus] diamond 2685 49.7 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Agrococcus Agrococcus terreus
31105880 31105880 PRJNA889065_S_NODE_21575_length_209_cov_3.590361_g21337_i0 PRJNA889065 21575 209 3.590361 7.50385449 root 1 Root_unresolved Root_unresolved 42.7 0.0149   NR MES8137701.1 1747 g21337 i0 46.5 4.32057416267943 43 19 61.7 1 130 2 61 99 MES8137701.1 hypothetical protein [Cutibacterium acnes] diamond 903 42.7 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes
31129404 31129404 PRJNA889065_S_NODE_18915_length_224_cov_1.524862_g18677_i0 PRJNA889065 18915 224 1.524862 3.41569088 Allosalinactinospora lopnorensis 1352348 Bacteria Bacteria 40.8 0.0474   NR WP_046470196.1 1352348 g18677 i0 31.7 0.84375 63 43 84.4 0 14 202 31 93 WP_046470196.1 EthD domain-containing protein [Allosalinactinospora lopnorensis] diamond 189 40.8 1 Bacteria   Bacillati Actinomycetota Actinomycetes Streptosporangiales Nocardiopsidaceae Allosalinactinospora Allosalinactinospora lopnorensis
31295640 31295640 PRJNA889065_S_NODE_9835_length_304_cov_5.291188_g9597_i0 PRJNA889065 9835 304 5.291188 16.08521152 Bacillati 1783272 Bacteria Bacteria 48.5 1.35e-4   NR MEA2136664.1 2586742 g9597 i0 52.3 1.71710526315789 44 21 43.4 0 28 159 44 87 MEA2136664.1 hypothetical protein [Solirubrobacteraceae bacterium] diamond 522 48.5 1 Bacteria   Bacillati Actinomycetota Thermoleophilia Solirubrobacterales Solirubrobacteraceae   Solirubrobacteraceae bacterium
31604175 31604175 PRJNA889065_S_NODE_30176_length_175_cov_2.439394_g29938_i0 PRJNA889065 30176 175 2.439394 4.2689395 Nocardia otitidiscaviarum 1823 Bacteria Bacteria 55.5 3.6e-8   NR WP_228811956.1 1823 g29938 i0 47.2 1.81714285714286 53 28 90.9 0 172 14 1 53 WP_228811956.1 hypothetical protein, partial [Nocardia otitidiscaviarum] diamond 318 55.5 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Nocardia Nocardia otitidiscaviarum
31920432 31920432 PRJNA889065_S_NODE_22277_length_206_cov_1.693252_g22039_i0 PRJNA889065 22277 206 1.693252 3.48809912 Actinomycetota bacterium 2900548 Bacteria Bacteria 66.6 2.29e-11   NR MBC7464176.1 2900548 g22039 i0 55.2 3.37864077669903 58 26 84.5 0 6 179 150 207 MBC7464176.1 NAD(P)H-dependent oxidoreductase [Actinomycetota bacterium] diamond 696 66.6 1 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;