RNAquarium Metadata Server
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contig_metadata

12 rows where bioproject = "PRJNA889065" and tax_clade = "core chlorophytes"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 12 ✖

bioproject 1

  • PRJNA889065 · 12 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11066914 11066914 PRJNA889065_S_NODE_35109_length_161_cov_1.694915_g34871_i0 PRJNA889065 35109 161 1.694915 2.72881315 Trebouxia lynnae 1825957 Plants Plants 189 9.77e-44   NTclustered gi|1750939486|gb|MH917293.1| 1825957 g34871 i0 87.64 60.6086956521739 178 3 99 4 1 159 17516 17693 Trebouxia sp. TR9 mitochondrion, complete genome blastn 9758 189 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia lynnae
12342518 12342518 PRJNA889065_S_NODE_35110_length_161_cov_1.686441_g34872_i0 PRJNA889065 35110 161 1.686441 2.71517001 Trebouxia sp. SL0000003 3350044 Plants Plants 215 1.61e-51   NTclustered gi|2917930141|emb|OZ234926.1| 3350044 g34872 i0 93.243 3.71428571428571 148 7 92 3 14 161 110362 110506 Trebouxia sp. SL0000003 genome assembly, organelle: mitochondrion blastn 598 215 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. SL0000003
17819700 17819700 PRJNA889065_S_NODE_1014_length_763_cov_17.087500_g875_i0 PRJNA889065 1014 763 17.0875 130.377625 Trebouxiophyceae 75966 Plants Plants 63.9 3.54e-5   NTclustered gi|371782132|emb|HE610164.1| 33092 g875 i0 95 8.09305373525557 40 2 5 0 326 365 76 37 Koliella longiseta plastid partial 23S rRNA gene, strain SAG 470-1 blastn 6175 63.9 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Koliellaceae Koliella Koliella longiseta
26928956 26928956 PRJNA889065_S_NODE_18862_length_224_cov_2.237569_g18624_i0 PRJNA889065 18862 224 2.237569 5.01215456 Chlamydomonas eustigma 1157962 Plants Plants 62 4.71e-9   NR GAX75026.1 1157962 g18624 i0 50 0.910714285714286 68 34 91.1 0 224 21 777 844 GAX75026.1 hypothetical protein CEUSTIGMA_g2472.t1 [Chlamydomonas eustigma] diamond 204 62 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas eustigma
27537358 27537358 PRJNA889065_S_NODE_6503_length_370_cov_3.547401_g6265_i0 PRJNA889065 6503 370 3.547401 13.1253837 Eukaryota 2759 Plants Plants 52.8 4.26e-5   NR XP_042928828.1 3055 g6265 i0 37.1 3.51081081081081 70 41 54.3 1 236 36 253 322 XP_042928828.1 uncharacterized protein CHLRE_01g048050v5 [Chlamydomonas reinhardtii] diamond 1299 53.1 0.994350282485876 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
28287020 28287020 PRJNA889065_S_NODE_14906_length_251_cov_2.211538_g14668_i0 PRJNA889065 14906 251 2.211538 5.55096038 Trebouxia sp. C 2796353 Plants Plants 62.4 4.92e-9   NR KAL0024679.1 2905653 g14668 i0 47.1 1.7808764940239 70 36 83.7 1 210 1 599 667 KAL0024679.1 hypothetical protein WJX77_008240 [Trebouxia sp. C0004] diamond 447 62.4 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. C0004
30253152 30253152 PRJNA889065_S_NODE_14212_length_257_cov_1.883178_g13974_i0 PRJNA889065 14212 257 1.883178 4.83976746 Eukaryota 2759 Plants Plants 107 1.06e-24   NR KAJ9523928.1 44745 g13974 i0 68.5 9.94552529182879 73 23 85.2 0 222 4 606 678 KAJ9523928.1 hypothetical protein QJQ45_022405 [Haematococcus lacustris] diamond 2556 107 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Haematococcaceae Haematococcus Haematococcus lacustris
31200361 31200361 PRJNA889065_S_NODE_12355_length_274_cov_1.584416_g12117_i0 PRJNA889065 12355 274 1.584416 4.34129984 Chlorella 3071 Plants Plants 43.5 0.0301   NR PRW58455.1 3076 g12117 i0 40 2.18978102189781 50 30 54.7 0 268 119 661 710 PRW58455.1 guanylate-binding 4-like [Chlorella sorokiniana] diamond 600 43.9 0.990888382687927 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella sorokiniana
32237214 32237214 PRJNA889065_S_NODE_12618_length_271_cov_2.052632_g12380_i0 PRJNA889065 12618 271 2.052632 5.56263272 Micractinium sp. CCAP 211/92 554058 Plants Plants 47 0.00162   NR KAL4444923.1 554058 g12380 i0 34.5 1.92619926199262 87 57 96.3 0 8 268 284 370 KAL4444923.1 hypothetical protein ABPG77_003973 [Micractinium sp. CCAP 211/92] diamond 522 47 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Micractinium Micractinium sp. CCAP 211/92
32237225 32237225 PRJNA889065_S_NODE_2558_length_542_cov_1.979960_g2340_i0 PRJNA889065 2558 542 1.97996 10.7313832 Scenedesmus sp. NREL 46B-D3 2650976 Plants Plants 63.9 2.96e-8   NR KAF6257747.1 2650976 g2340 i0 33.6 2.08671586715867 125 71 69.2 3 151 525 166 278 KAF6257747.1 RNA polymerase I-associated factor PAF67-domain-containing protein [Scenedesmus sp. NREL 46B-D3] diamond 1131 63.9 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Scenedesmaceae Scenedesmus Scenedesmus sp. NREL 46B-D3
32332136 32332136 PRJNA889065_S_NODE_8059_length_335_cov_2.297945_g7821_i0 PRJNA889065 8059 335 2.297945 7.69811575 Coccomyxa sp. Obi 2315456 Plants Plants 83.2 3.09e-16   NR BDA43847.1 2315456 g7821 i0 41.9 2.7134328358209 93 53 83.3 1 1 279 219 310 BDA43847.1 GPN-loop GTPase 1 [Coccomyxa sp. Obi] diamond 909 83.2 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa sp. Obi
32710668 32710668 PRJNA889065_S_NODE_5220_length_411_cov_4.203804_g4982_i0 PRJNA889065 5220 411 4.203804 17.27763444 Chlamydomonas eustigma 1157962 Plants Plants 175 1.2e-52   NR GAX77325.1 1157962 g4982 i0 66.9 1.8978102189781 130 43 94.9 0 6 395 75 204 GAX77325.1 hypothetical protein CEUSTIGMA_g4771.t1 [Chlamydomonas eustigma] diamond 780 175 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas eustigma

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;