RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA889065", tax_clade = "Haptista" and tax_superkingdom = "Eukaryota"

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analysis 2

tax_superkingdom 1

  • Eukaryota · 3 ✖

tax_phylum 1

tax_clade 1

  • Haptista · 3 ✖

bioproject 1

  • PRJNA889065 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
19990001 19990001 PRJNA889065_S_NODE_28276_length_182_cov_1.323741_g28038_i0 PRJNA889065 28276 182 1.323741 2.40920862 Raphidocystis contractilis 2792838 Root_unresolved Root_unresolved 130 6.95e-26   NTclustered gi|259475615|emb|FN392423.1| 2792838 g28038 i0 83.571 15.956043956044 140 21 76 2 21 159 277 139 Raphidiophrys contractilis partial mRNA for 40S ribosomal protein S23, contig D2-M13 blastn 2904 130 1 Eukaryota Haptista     Centroplasthelida Acanthocystida Raphidocystidae Raphidocystis Raphidocystis contractilis
28097727 28097727 PRJNA889065_S_NODE_2025_length_589_cov_87.395604_g1822_i0 PRJNA889065 2025 589 87.395604 514.76010756 Emiliania huxleyi CCMP1516 280463 Haptophyta other_Eukaryota 109 1.04e-26   NR XP_005778651.1 280463 g1822 i0 39.9 0.728353140916808 143 74 72.8 2 80 508 2 132 XP_005778651.1 hypothetical protein EMIHUDRAFT_73627, partial [Emiliania huxleyi CCMP1516] diamond 429 109 1 Eukaryota Haptista   Haptophyta   Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi
29392428 29392428 PRJNA889065_S_NODE_10469_length_296_cov_1.984190_g10231_i0 PRJNA889065 10469 296 1.98419 5.8732024 Emiliania huxleyi CCMP1516 280463 Haptophyta other_Eukaryota 85.9 3.08e-19   NR XP_005782836.1 280463 g10231 i0 52.1 0.972972972972973 96 42 96.3 2 286 2 16 108 XP_005782836.1 hypothetical protein EMIHUDRAFT_442529 [Emiliania huxleyi CCMP1516] diamond 288 85.9 1 Eukaryota Haptista   Haptophyta   Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;