RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA889065", tax_clade = "Amoebozoa" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 3 ✖

tax_clade 1

  • Amoebozoa · 3 ✖

bioproject 1

  • PRJNA889065 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29013764 29013764 PRJNA889065_S_NODE_17168_length_235_cov_1.109375_g16930_i0 PRJNA889065 17168 235 1.109375 2.60703125 Paravannella minima 1443144 Discosea other_Eukaryota 98.2 4.4e-22   NR YP_009557805.1 1443144 g16930 i0 65 1.55744680851064 60 21 76.6 0 54 233 307 366 YP_009557805.1 NADH dehydrogenase subunit 7 [Paravannella minima] diamond 366 98.2 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Paravannella Paravannella minima
29179329 29179329 PRJNA889065_S_NODE_9509_length_309_cov_4.203008_g9271_i0 PRJNA889065 9509 309 4.203008 12.98729472 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 86.3 4.22e-17   NR XP_004334102.1 1257118 g9271 i0 43.4 4.77669902912621 99 53 93.2 1 307 20 497 595 XP_004334102.1 PH domain containing protein [Acanthamoeba castellanii str. Neff] diamond 1476 87 0.991954022988506 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
30845433 30845433 PRJNA889065_S_NODE_10914_length_290_cov_3.149798_g10676_i0 PRJNA889065 10914 290 3.149798 9.1344142 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 55.8 1.54e-6   NR XP_004339486.1 1257118 g10676 i0 32.6 0.889655172413793 86 54 84.8 2 249 4 336 421 XP_004339486.1 Nacylsphingosine amidohydrolase, putative [Acanthamoeba castellanii str. Neff] diamond 258 55.8 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;