RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA888821", tax_phylum = "Negarnaviricota" and tax_superkingdom = "Viruses"

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tax_superkingdom 1

  • Viruses · 2 ✖

tax_phylum 1

  • Negarnaviricota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA888821 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11066784 11066784 PRJNA888821_P_NODE_9049_length_310_cov_12.421941_g8967_i0 PRJNA888821 9049 310 12.421941 38.508017100000004 brine shrimp yue-like virus 3 2900455 Viruses Viruses 272 2.04e-68   NTclustered gi|2209094280|gb|OL472816.1| 2900455 g8967 i0 99.333 3.83548387096774 150 1 96 0 1 150 4888 4739 MAG: Brine shrimp yue-like virus 3 isolate 02/QH/92-02 segment 1 RNA-dependent RNA polymerase gene, complete cds blastn 1189 272 1 Viruses   Orthornavirae Negarnaviricota Yunchangviricetes Goujianvirales Yueviridae   brine shrimp yue-like virus 3
11445675 11445675 PRJNA888821_P_NODE_3389_length_377_cov_1.467105_g3308_i0 PRJNA888821 3389 377 1.467105 5.53098585 Orthorubulavirus 2560195 Viruses Viruses 689 0   NTclustered gi|1806608684|gb|MN604146.1| 2560580 g3308 i0 99.735 70.867374005305 377 0 100 1 1 377 1675 1300 Mammalian orthorubulavirus 5 isolate XJ033, complete genome blastn 26717 689 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Paramyxoviridae Orthorubulavirus Orthorubulavirus mammalis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;