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contig_metadata

23 rows where bioproject = "PRJNA888821" and tax_phylum = "Gemmatimonadota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 23 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA888821 · 23 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9791185 9791185 PRJNA888821_P_NODE_788_length_590_cov_12.651838_g716_i0 PRJNA888821 788 590 12.651838 74.6458442 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 558 2.82e-154   NTclustered gi|575456455|gb|CP007128.1| 861299 g716 i0 84.228 22.7271186440678 596 70 100 19 1 590 3043467 3044044 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 13409 558 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
11066757 11066757 PRJNA888821_P_NODE_689_length_619_cov_31.315018_g618_i0 PRJNA888821 689 619 31.315018 193.83996142 uncultured Gemmatimonadaceae bacterium 246130 Bacteria Bacteria 614 6.239999999999999e-171   NTclustered gi|2874253995|emb|OY970320.1| 246130 g618 i0 84.897 42.4184168012924 629 72 99 18 3 618 231271 231889 MAG: uncultured Gemmatimonadaceae bacterium isolate MFD00031.bin.c.2 genome assembly, chromosome: 1 blastn 26257 614 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   uncultured Gemmatimonadaceae bacterium
12341705 12341705 PRJNA888821_P_NODE_1530_length_479_cov_13.512315_g1455_i0 PRJNA888821 1530 479 13.512315 64.72398885 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 394 6.729999999999999e-105   NTclustered gi|2874253978|emb|OY970303.1| 412054 g1455 i0 81.893 232.807933194154 486 71 100 15 1 479 5915732 5915257 MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 blastn 111515 394 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
13616809 13616809 PRJNA888821_P_NODE_49411_length_207_cov_10.388060_g49328_i0 PRJNA888821 49411 207 10.38806 21.5032842 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 278 2.75e-70   NTclustered gi|2874254163|emb|OY970395.1| 412054 g49328 i0 90.909 70.8695652173913 209 15 100 4 1 207 1607679 1607885 MAG: uncultured Gemmatimonadales bacterium isolate MFD05684.bin.c.1 genome assembly, chromosome: 1 blastn 14670 278 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
14891191 14891191 PRJNA888821_P_NODE_53572_length_196_cov_8.609756_g53489_i0 PRJNA888821 53572 196 8.609756 16.87512176 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 244 2.61e-60   NTclustered gi|2874253978|emb|OY970303.1| 412054 g53489 i0 89.286 49.9948979591837 196 20 100 1 1 196 1903444 1903250 MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 blastn 9799 244 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
15269797 15269797 PRJNA888821_P_NODE_36752_length_246_cov_17.647399_g36669_i0 PRJNA888821 36752 246 17.647399 43.41260154 Gemmatimonadaceae 219687 Bacteria Bacteria 383 6.94e-102   NTclustered gi|470475286|ref|NR_076270.1| 173480 g36669 i0 94.737 164.414634146341 247 12 100 1 1 246 2321 2567 Gemmatimonas aurantiaca strain T-27 23S ribosomal RNA gene, complete sequence blastn 40446 383 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas aurantiaca
16165293 16165293 PRJNA888821_P_NODE_13813_length_310_cov_7.464135_g13731_i0 PRJNA888821 13813 310 7.464135 23.1388185 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 171 7.66e-38   NTclustered gi|2874253978|emb|OY970303.1| 412054 g13731 i0 87.417 4.34838709677419 151 15 96 4 1 150 1903778 1903631 MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 blastn 1348 171 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
16165514 16165514 PRJNA888821_P_NODE_2833_length_398_cov_14.046154_g2754_i0 PRJNA888821 2833 398 14.046154 55.90369292 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 424 7.01e-114   NTclustered gi|2874253728|emb|OY969570.1| 412054 g2754 i0 86.146 156.072864321608 397 49 99 6 4 398 172445 172053 MAG: uncultured Gemmatimonadales bacterium isolate MFD02840.bin.c.1 genome assembly, chromosome: 1 blastn 62117 424 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
21265216 21265216 PRJNA888821_P_NODE_797_length_588_cov_1.155340_g725_i0 PRJNA888821 797 588 1.15534 6.7933992 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 850 0   NTclustered gi|575456455|gb|CP007128.1| 861299 g725 i0 92.869 145.382653061224 589 37 100 4 1 588 3043134 3043718 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 85485 850 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
21265227 21265227 PRJNA888821_P_NODE_8317_length_310_cov_13.873418_g8235_i0 PRJNA888821 8317 310 13.873418 43.0075958 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 137 7.77e-28   NTclustered gi|2874253755|emb|OY969695.1| 412054 g8235 i0 86.885 0.793548387096774 122 16 39 0 1 122 133375 133254 MAG: uncultured Gemmatimonadales bacterium isolate MFD04967.bin.1.34 genome assembly, chromosome: 1 blastn 246 137 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
22919668 22919668 PRJNA888821_P_NODE_51258_length_202_cov_7.627907_g51175_i0 PRJNA888821 51258 202 7.627907 15.40837214 Bacteria 2 Bacteria Bacteria 147 7.84e-31   NTclustered gi|2107911987|gb|CP070812.1| 2026742 g51175 i0 80.612 13.5891089108911 196 32 96 6 2 194 1718945 1719137 MAG: Gemmatimonadetes bacterium isolate bin1194 chromosome blastn 2745 148 0.993243243243243 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
23815393 23815393 PRJNA888821_P_NODE_5479_length_321_cov_6.475806_g5397_i0 PRJNA888821 5479 321 6.475806 20.78733726 Pseudogemmatithrix spongiicola 3062599 Bacteria Bacteria 110 1.76e-19   NTclustered gi|2557479348|gb|CP130613.1| 3062599 g5397 i0 81.679 0.81619937694704 131 24 41 0 1 131 2220257 2220387 Pseudogemmatithrix spongiicola strain 318 chromosome, complete genome blastn 262 110 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Pseudogemmatithrix Pseudogemmatithrix spongiicola
27245094 27245094 PRJNA888821_P_NODE_45883_length_218_cov_8.448276_g45800_i0 PRJNA888821 45883 218 8.448276 18.41724168 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 95.1 8.050000000000001e-21   NR HEY4306869.1 2026741 g45800 i0 63.9 1.87155963302752 72 25 97.7 1 5 217 322 393 HEY4306869.1 pitrilysin family protein [Gemmatimonadaceae bacterium] diamond 408 95.1 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
28161102 28161102 PRJNA888821_P_NODE_11045_length_310_cov_9.932489_g10963_i0 PRJNA888821 11045 310 9.932489 30.7907159 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 91.3 7.27e-19   NR HET6778985.1 2448054 g10963 i0 92 3 50 4 48.4 0 1 150 505 554 HET6778985.1 3-deoxy-7-phosphoheptulonate synthase [Gemmatimonadales bacterium] diamond 930 91.3 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
28823694 28823694 PRJNA888821_P_NODE_38248_length_243_cov_6.547059_g38165_i0 PRJNA888821 38248 243 6.547059 15.90935337 Gemmatimonas sp. 1962908 Bacteria Bacteria 142 2.62e-41   NR WP_331050585.1 1962908 g38165 i0 87.7 1 81 10 100 0 243 1 20 100 WP_331050585.1 hypothetical protein [Gemmatimonas sp.] diamond 243 142 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas sp.
29644489 29644489 PRJNA888821_P_NODE_42230_length_231_cov_4.094937_g42147_i0 PRJNA888821 42230 231 4.094937 9.45930447 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 152 9.67e-44   NR HZN98768.1 2448054 g42147 i0 92.1 2.96103896103896 76 6 98.7 0 2 229 119 194 HZN98768.1 PHP domain-containing protein [Gemmatimonadales bacterium] diamond 684 152 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
29652412 29652412 PRJNA888821_P_NODE_2990_length_392_cov_12.542320_g2909_i0 PRJNA888821 2990 392 12.54232 49.1658944 Pseudomonadati 3379134 Bacteria Bacteria 138 7.729999999999998e-35   NR MBV9108362.1 2026742 g2909 i0 77.3 2.34183673469388 75 17 57.4 0 392 168 673 747 MBV9108362.1 hypothetical protein [Gemmatimonadota bacterium] diamond 918 138 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
29842195 29842195 PRJNA888821_P_NODE_22631_length_307_cov_10.115385_g22549_i0 PRJNA888821 22631 307 10.115385 31.05423195 Pseudomonadati 3379134 Bacteria Bacteria 62.4 7.17e-9   NR WP_337172358.1 173480 g22549 i0 59.6 0.928338762214984 47 19 45.9 0 1 141 128 174 WP_337172358.1 SRPBCC domain-containing protein [Gemmatimonas aurantiaca] diamond 285 62.4 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas aurantiaca
30442636 30442636 PRJNA888821_P_NODE_31433_length_264_cov_1.246073_g31350_i0 PRJNA888821 31433 264 1.246073 3.28963272 Gemmatimonas 173479 Bacteria Bacteria 130 6.7999999999999995e-35   NR WP_291261215.1 1962908 g31350 i0 80.2 8.76136363636364 86 17 97.7 0 259 2 161 246 WP_291261215.1 prohibitin family protein [Gemmatimonas sp.] diamond 2313 130 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas sp.
30782171 30782171 PRJNA888821_P_NODE_40494_length_237_cov_5.152439_g40411_i0 PRJNA888821 40494 237 5.152439 12.21128043 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 106 1.16e-24   NR MBV9108362.1 2026742 g40411 i0 67.6 0.936708860759494 74 24 93.7 0 225 4 927 1000 MBV9108362.1 hypothetical protein [Gemmatimonadota bacterium] diamond 222 106 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
31224364 31224364 PRJNA888821_P_NODE_19195_length_310_cov_3.388186_g19113_i0 PRJNA888821 19195 310 3.388186 10.5033766 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 93.6 8.719999999999999e-23   NR HEY4132494.1 2026741 g19113 i0 89.8 1.42258064516129 49 5 47.4 0 164 310 1 49 HEY4132494.1 pyruvate kinase [Gemmatimonadaceae bacterium] diamond 441 93.6 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
32015296 32015296 PRJNA888821_P_NODE_10398_length_310_cov_10.611814_g10316_i0 PRJNA888821 10398 310 10.611814 32.8966234 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 74.3 5.59e-13   NR MEO7367026.1 2026741 g10316 i0 48.2 2.92258064516129 85 42 82.3 1 292 38 151 233 MEO7367026.1 M20/M25/M40 family metallo-hydrolase [Gemmatimonadaceae bacterium] diamond 906 74.3 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
32023253 32023253 PRJNA888821_P_NODE_14378_length_310_cov_7.021097_g14296_i0 PRJNA888821 14378 310 7.021097 21.7654007 FCB group 1783270 Bacteria Bacteria 92 2.76e-20   NR MCC6771627.1 2026741 g14296 i0 91.8 0.948387096774194 49 4 47.4 0 162 308 46 94 MCC6771627.1 ceramidase domain-containing protein [Gemmatimonadaceae bacterium] diamond 294 92.8 0.991379310344828 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;