RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA888821" and tax_phylum = "Evosea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Evosea · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA888821 · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
22539942 22539942 PRJNA888821_P_NODE_48178_length_211_cov_5.463768_g48095_i0 PRJNA888821 48178 211 5.463768 11.52855048 Physarum polycephalum 5791 Evosea other_Eukaryota 148 2.3e-31   NTclustered gi|3225|emb|V01160.1| 5791 g48095 i0 80 6.01421800947867 220 29 99 14 1 210 18 232 Introns 1 and 2 of Physarum gene for 26S ribosomal RNA, together with flanking exon regions blastn 1269 148 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Physarum Physarum polycephalum
31160960 31160960 PRJNA888821_P_NODE_8235_length_310_cov_14.050633_g8153_i0 PRJNA888821 8235 310 14.050633 43.5569623 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 57.4 4.41e-8   NR PRP77680.1 1890364 g8153 i0 55.1 0.474193548387097 49 21 47.4 1 309 163 39 86 PRP77680.1 hypothetical protein PROFUN_00541 [Planoprotostelium fungivorum] diamond 147 57.4 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;