RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA888821", tax_kingdom = "Viridiplantae" and tax_phylum = "Chlorophyta"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chlorophyta · 3 ✖

tax_kingdom 1

  • Viridiplantae · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA888821 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
19093459 19093459 PRJNA888821_P_NODE_43235_length_227_cov_11.889610_g43152_i0 PRJNA888821 43235 227 11.88961 26.9894147 root 1 Root_unresolved Root_unresolved 135 1.95e-27   NTclustered gi|1236573378|ref|XR_002608755.1| 41875 g43152 i0 94.318 39.0925110132159 88 5 39 0 139 226 1831 1744 Bathycoccus prasinos ribosomal RNA EukLSU (n/a) (rRNA_EukLSU), rRNA blastn 8874 135 1 Eukaryota   Viridiplantae Chlorophyta Mamiellophyceae Mamiellales Bathycoccaceae Bathycoccus Bathycoccus prasinos
27750699 27750699 PRJNA888821_P_NODE_33024_length_257_cov_7.630435_g32941_i0 PRJNA888821 33024 257 7.630435 19.61021795 Prototheca wickerhamii 3111 Plants Plants 95.5 1.24e-20   NR KAK2078299.1 3111 g32941 i0 52.4 1.91439688715953 82 39 95.7 0 4 249 317 398 KAK2078299.1 hypothetical protein QBZ16_004168 [Prototheca wickerhamii] diamond 492 95.5 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Prototheca Prototheca wickerhamii
31509372 31509372 PRJNA888821_P_NODE_39076_length_241_cov_11.065476_g38993_i0 PRJNA888821 39076 241 11.065476 26.66779716 Chlorella sorokiniana 3076 Plants Plants 42.7 0.0366   NR PRW44411.1 3076 g38993 i0 37.7 0.759336099585062 61 32 68.5 1 185 21 714 774 PRW44411.1 helicase and polymerase-containing TEBICHI isoform X1 [Chlorella sorokiniana] diamond 183 42.7 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella sorokiniana

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;