metadata: contig_metadata: 18 rows where bioproject = "PRJNA888821", tax_kingdom = "Pseudomonadati" and tax

18 rows where bioproject = "PRJNA888821", tax_kingdom = "Pseudomonadati" and tax_phylum = "Campylobacterota"

descending

Link	rowid ▼	query	bioproject	node	length	coverage	rel_abundance	taxname_lca	taxid_lca	taxoncategory	taxoncategorysimple	bits	evalue	analysis_used	target	taxid	gene	allele	pident	sumperc_cov	alnlen	mismatch	qcov	gapopen	qstart	qend	tstart	tend	target_title	analysis	sumalnlen	maxbits	bits_percmax	tax_superkingdom	tax_kingdom	tax_phylum	tax_class	tax_order	tax_family	tax_genus	tax_species
3413339	3413339	PRJNA888821_P_NODE_14663_length_310_cov_6.801688_g14581_i0	PRJNA888821	14663	310	6.801688	21.0852328	Campylobacter ureolyticus	827	Bacteria	Bacteria	278	4.39e-70	NTclustered	gi\|1966876394\|gb\|CP068487.1\|	827	g14581	i0	100	4.83870967741935	150	0	97	0	161	310	675470	675321	Campylobacter ureolyticus strain FDAARGOS_1102 chromosome	blastn	1500	278	1	Bacteria	Pseudomonadati	Campylobacterota	Epsilonproteobacteria	Campylobacterales	Campylobacteraceae	Campylobacter	Campylobacter ureolyticus
3793921	3793921	PRJNA888821_P_NODE_46003_length_217_cov_34.805556_g45920_i0	PRJNA888821	46003	217	34.805556	75.52805652	root	1	Root_unresolved	Root_unresolved	401	1.6499999999999994e-107	NTclustered	gi\|2562786027\|gb\|CP120256.1\|	197	g45920	i0	100	174.285714285714	217	0	100	0	1	217	1481537	1481321	Campylobacter jejuni strain PS_41_2021 chromosome, complete genome	blastn	37820	401	1	Bacteria	Pseudomonadati	Campylobacterota	Epsilonproteobacteria	Campylobacterales	Campylobacteraceae	Campylobacter	Campylobacter jejuni
6345590	6345590	PRJNA888821_P_NODE_10665_length_310_cov_10.333333_g10583_i0	PRJNA888821	10665	310	10.333333	32.0333323	Campylobacter	194	Bacteria	Bacteria	54.7	0.008	NTclustered	gi\|2093921460\|gb\|CP082871.1\|	76517	g10583	i0	100	0.187096774193548	29	0	9	0	105	133	199241	199213	Campylobacter hominis strain FDAARGOS_1467 chromosome, complete genome	blastn	58	54.7	1	Bacteria	Pseudomonadati	Campylobacterota	Epsilonproteobacteria	Campylobacterales	Campylobacteraceae	Campylobacter	Campylobacter hominis
11066297	11066297	PRJNA888821_P_NODE_28029_length_278_cov_13.239024_g27947_i0	PRJNA888821	28029	278	13.239024	36.80448672	Wolinella succinogenes	844	Bacteria	Bacteria	457	4.639999999999999e-124	NTclustered	gi\|34482500\|emb\|BX571658.1\|	844	g27947	i0	96.39	1.99280575539568	277	10	99	0	1	277	237272	236996	Wolinella succinogenes, complete genome; segment 2/7	blastn	554	457	1	Bacteria	Pseudomonadati	Campylobacterota	Epsilonproteobacteria	Campylobacterales	Helicobacteraceae	Wolinella	Wolinella succinogenes
11445530	11445530	PRJNA888821_P_NODE_21769_length_309_cov_4.199153_g21687_i0	PRJNA888821	21769	309	4.199153	12.97538277	root	1	Root_unresolved	Root_unresolved	278	4.37e-70	NTclustered	gi\|2096309699\|gb\|CP083377.1\|	195	g21687	i0	100	84.4498381877023	150	0	49	0	1	150	1024743	1024892	Campylobacter coli strain C203110 chromosome, complete genome	blastn	26095	278	1	Bacteria	Pseudomonadati	Campylobacterota	Epsilonproteobacteria	Campylobacterales	Campylobacteraceae	Campylobacter	Campylobacter coli
12341967	12341967	PRJNA888821_P_NODE_31610_length_263_cov_5.357895_g31527_i0	PRJNA888821	31610	263	5.357895	14.09126385	Aliarcobacter cryaerophilus	28198	Bacteria	Bacteria	475	1.2e-129	NTclustered	gi\|1817415263\|gb\|CP026655.1\|	28198	g31527	i0	99.24	30.0532319391635	263	2	100	0	1	263	325176	325438	Aliarcobacter cryaerophilus strain G13RTA chromosome, complete genome	blastn	7904	475	1	Bacteria	Pseudomonadati	Campylobacterota	Epsilonproteobacteria	Campylobacterales	Arcobacteraceae	Aliarcobacter	Aliarcobacter cryaerophilus
17819141	17819141	PRJNA888821_P_NODE_11314_length_310_cov_9.637131_g11232_i0	PRJNA888821	11314	310	9.637131	29.8751061	root	1	Root_unresolved	Root_unresolved	278	4.39e-70	NTclustered	gi\|1887121882\|gb\|CP059971.1\|	197	g11232	i0	100	64.9645161290323	150	0	62	0	161	310	101143	100994	Campylobacter jejuni strain C34 chromosome, complete genome	blastn	20139	278	1	Bacteria	Pseudomonadati	Campylobacterota	Epsilonproteobacteria	Campylobacterales	Campylobacteraceae	Campylobacter	Campylobacter jejuni
20368131	20368131	PRJNA888821_P_NODE_24336_length_293_cov_14.513636_g24254_i0	PRJNA888821	24336	293	14.513636	42.52495348	Campylobacterales	213849	Bacteria	Bacteria	81.3	1.87e-15	NR	WP_111228866.1	1458358	g24254	i0	84.8	9.31740614334471	46	7	47.1	0	1	138	98	143	WP_111228866.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase [Helicobacter valdiviensis]	diamond	2730	81.6	0.996323529411765	Bacteria	Pseudomonadati	Campylobacterota	Epsilonproteobacteria	Campylobacterales	Helicobacteraceae	Helicobacter	Helicobacter valdiviensis
23815294	23815294	PRJNA888821_P_NODE_47699_length_212_cov_11.079137_g47616_i0	PRJNA888821	47699	212	11.079137	23.48777044	Helicobacter pylori	210	Bacteria	Bacteria	359	9.81e-95	NTclustered	gi\|2814758776\|gb\|PQ423797.1\|	210	g47616	i0	97.619	0.990566037735849	210	4	99	1	2	211	20138	20346	Helicobacter pylori strain TER81 plasmid pTER81, complete sequence	blastn	210	359	1	Bacteria	Pseudomonadati	Campylobacterota	Epsilonproteobacteria	Campylobacterales	Helicobacteraceae	Helicobacter	Helicobacter pylori
24193647	24193647	PRJNA888821_P_NODE_6299_length_311_cov_12.542017_g6217_i0	PRJNA888821	6299	311	12.542017	39.00567287	root	1	Root_unresolved	Root_unresolved	279	1.22e-70	NTclustered	gi\|2562786027\|gb\|CP120256.1\|	197	g6217	i0	100	97.3376205787781	151	0	96	0	1	151	1302941	1303091	Campylobacter jejuni strain PS_41_2021 chromosome, complete genome	blastn	30272	279	1	Bacteria	Pseudomonadati	Campylobacterota	Epsilonproteobacteria	Campylobacterales	Campylobacteraceae	Campylobacter	Campylobacter jejuni
25088897	25088897	PRJNA888821_P_NODE_30360_length_268_cov_6.989744_g30277_i0	PRJNA888821	30360	268	6.989744	18.73251392	Campylobacter sp. GTC17093	3382266	Bacteria	Bacteria	60.2	1.47e-4	NTclustered	gi\|2866683719\|dbj\|AP038832.1\|	3382266	g30277	i0	83.077	0.242537313432836	65	11	24	0	17	81	921597	921661	Campylobacter sp. GTC17093 DNA, complete genome	blastn	65	60.2	1	Bacteria	Pseudomonadati	Campylobacterota	Epsilonproteobacteria	Campylobacterales	Campylobacteraceae	Campylobacter	Campylobacter sp. GTC17093
27884584	27884584	PRJNA888821_P_NODE_14185_length_310_cov_7.168776_g14103_i0	PRJNA888821	14185	310	7.168776	22.2232056	Pseudomonadati	3379134	Bacteria	Bacteria	94	5.52e-21	NR	WP_066181739.1	544718	g14103	i0	72.5	5.66129032258065	69	14	66.8	1	207	1	16	79	WP_066181739.1 phospholipase D family protein [Aliarcobacter thereius]	diamond	1755	94.7	0.992608236536431	Bacteria	Pseudomonadati	Campylobacterota	Epsilonproteobacteria	Campylobacterales	Arcobacteraceae	Aliarcobacter	Aliarcobacter thereius
28547906	28547906	PRJNA888821_P_NODE_23067_length_306_cov_8.708155_g22985_i0	PRJNA888821	23067	306	8.708155	26.6469543	Pseudomonadati	3379134	Bacteria	Bacteria	58.5	9.43e-8	NR	WP_008244948.1	1165841	g22985	i0	55.6	1.86274509803922	45	20	44.1	0	1	135	49	93	WP_008244948.1 tetratricopeptide repeat protein [Sulfurovum sp. AR]	diamond	570	58.5	1	Bacteria	Pseudomonadati	Campylobacterota	Epsilonproteobacteria	Campylobacterales	Sulfurovaceae	Sulfurovum	Sulfurovum sp. AR
28571323	28571323	PRJNA888821_P_NODE_34127_length_253_cov_2.922222_g34044_i0	PRJNA888821	34127	253	2.922222	7.39322166	Helicobacter pylori	210	Bacteria	Bacteria	89.4	1.27e-19	NR	MWR36382.1	210	g34044	i0	80.6	1.16205533596838	98	5	99.6	1	252	1	34	131	MWR36382.1 hypothetical protein [Helicobacter pylori]	diamond	294	89.4	1	Bacteria	Pseudomonadati	Campylobacterota	Epsilonproteobacteria	Campylobacterales	Helicobacteraceae	Helicobacter	Helicobacter pylori
29644491	29644491	PRJNA888821_P_NODE_45690_length_218_cov_26.544828_g45607_i0	PRJNA888821	45690	218	26.544828	57.86772504	Helicobacter pylori	210	Bacteria	Bacteria	60.8	4.19e-10	NR	GAA6953498.1	210	g45607	i0	96.2	0.357798165137615	26	1	35.8	0	147	70	11	36	GAA6953498.1 hypothetical protein Kyoto211A_0680 [Helicobacter pylori]	diamond	78	60.8	1	Bacteria	Pseudomonadati	Campylobacterota	Epsilonproteobacteria	Campylobacterales	Helicobacteraceae	Helicobacter	Helicobacter pylori
29707597	29707597	PRJNA888821_P_NODE_45090_length_221_cov_4.891892_g45007_i0	PRJNA888821	45090	221	4.891892	10.81108132	Desulfurellales bacterium	2482794	Bacteria	Bacteria	53.9	6.6e-7	NR	TXH58565.1	2482794	g45007	i0	66.7	0.48868778280543	36	12	48.9	0	2	109	102	137	TXH58565.1 MAG: hypothetical protein E6Q97_01930 [Desulfurellales bacterium]	diamond	108	53.9	1	Bacteria	Pseudomonadati	Campylobacterota	Desulfurellia	Desulfurellales			Desulfurellales bacterium
30750659	30750659	PRJNA888821_P_NODE_13434_length_310_cov_7.751055_g13352_i0	PRJNA888821	13434	310	7.751055	24.0282705	Campylobacter ureolyticus	827	Bacteria	Bacteria	195	5.29e-59	NR	WP_244079678.1	827	g13352	i0	87.3	1.06451612903226	110	7	99.7	1	2	310	220	329	WP_244079678.1 3'-5' exonuclease [Campylobacter ureolyticus]	diamond	330	195	1	Bacteria	Pseudomonadati	Campylobacterota	Epsilonproteobacteria	Campylobacterales	Campylobacteraceae	Campylobacter	Campylobacter ureolyticus
32054781	32054781	PRJNA888821_P_NODE_1378_length_498_cov_8.000000_g1303_i0	PRJNA888821	1378	498	8	39.84	Pseudomonadati	3379134	Bacteria	Bacteria	203	3.9500000000000004e-59	NR	MDD3500783.1	1969726	g1303	i0	76.4	2.51807228915663	140	5	67.5	1	338	3	152	291	MDD3500783.1 group II intron reverse transcriptase/maturase [Sulfurovum sp.]	diamond	1254	203	1	Bacteria	Pseudomonadati	Campylobacterota	Epsilonproteobacteria	Campylobacterales	Sulfurovaceae	Sulfurovum	Sulfurovum sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;