RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA888821", tax_kingdom = "Metazoa" and tax_phylum = "Platyhelminthes"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 3 ✖

tax_kingdom 1

  • Metazoa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA888821 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16165983 16165983 PRJNA888821_P_NODE_8333_length_310_cov_13.843882_g8251_i0 PRJNA888821 8333 310 13.843882 42.9160342 Stenostomum sthenum 1611831 Platyhelminthes Platyhelminthes 187 7.61e-43   NTclustered gi|1215837197|ref|NC_035256.1| 1611831 g8251 i0 89.865 0.47741935483871 148 11 47 4 5 150 8387 8242 Stenostomum sthenum mitochondrion, complete genome blastn 148 187 1 Eukaryota Opisthokonta Metazoa Platyhelminthes     Stenostomidae Stenostomum Stenostomum sthenum
24193099 24193099 PRJNA888821_P_NODE_1039_length_542_cov_1.712154_g966_i0 PRJNA888821 1039 542 1.712154 9.27987468 Metazoa 33208 Platyhelminthes Platyhelminthes 832 0   NTclustered gi|60687563|gb|AY914894.1| 6182 g966 i0 99.779 83.0424354243542 453 1 84 0 90 542 217 669 Schistosoma japonicum unknown mRNA blastn 45009 832 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
29526563 29526563 PRJNA888821_P_NODE_19650_length_310_cov_2.856540_g19568_i0 PRJNA888821 19650 310 2.85654 8.855274 root 1 Root_unresolved Root_unresolved 64.7 8.39e-10   NR VZI44085.1 99802 g19568 i0 71.7 5.80645161290323 46 13 44.5 0 1 138 82 127 VZI44085.1 unnamed protein product [Spirometra erinaceieuropaei] diamond 1800 64.7 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Cestoda Diphyllobothriidea Diphyllobothriidae Spirometra Spirometra erinaceieuropaei

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;