RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA888821", tax_kingdom = "Fungi" and tax_phylum = "Chytridiomycota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 4 ✖

tax_kingdom 1

  • Fungi · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA888821 · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
22539643 22539643 PRJNA888821_P_NODE_32178_length_260_cov_13.363636_g32095_i0 PRJNA888821 32178 260 13.363636 34.7454536 Rhizophydiales sp. 2011922 Fungi Fungi 285 2.15e-72   NTclustered gi|2468790828|gb|OQ702861.1| 2011922 g32095 i0 86.873 99.0153846153846 259 28 99 5 1 257 3680 3934 Rhizophydiales sp. isolate PSC047 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 25744 285 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales     Rhizophydiales sp.
28950504 28950504 PRJNA888821_P_NODE_38388_length_243_cov_0.905882_g38305_i0 PRJNA888821 38388 243 0.905882 2.20129326 Phlyctochytrium planicorne 261098 Fungi Fungi 73.6 5.14e-13   NR KAJ3105268.1 261098 g38305 i0 51.7 2.8641975308642 58 28 71.6 0 190 17 697 754 KAJ3105268.1 hypothetical protein HDU97_008291 [Phlyctochytrium planicorne] diamond 696 73.6 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Chytridiales Chytridiaceae Phlyctochytrium Phlyctochytrium planicorne
29771035 29771035 PRJNA888821_P_NODE_30671_length_267_cov_1.474227_g30588_i0 PRJNA888821 30671 267 1.474227 3.93618609 Neocallimastix californiae 1754190 Fungi Fungi 102 3.74e-23   NR ORY76185.1 1754190 g30588 i0 63.2 0.853932584269663 76 28 85.4 0 266 39 771 846 ORY76185.1 elongation factor 2 [Neocallimastix californiae] diamond 228 102 1 Eukaryota Opisthokonta Fungi Chytridiomycota Neocallimastigomycetes Neocallimastigales Neocallimastigaceae Neocallimastix Neocallimastix californiae
29929283 29929283 PRJNA888821_P_NODE_18631_length_310_cov_3.911392_g18549_i0 PRJNA888821 18631 310 3.911392 12.1253152 Batrachochytrium salamandrivorans 1357716 Fungi Fungi 71.6 5.8e-12   NR KAH9261468.1 1357716 g18549 i0 67.3 0.474193548387097 49 16 47.4 0 2 148 375 423 KAH9261468.1 hypothetical protein BASA81_000124 [Batrachochytrium salamandrivorans] diamond 147 71.6 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales   Batrachochytrium Batrachochytrium salamandrivorans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;