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contig_metadata

8 rows where bioproject = "PRJNA888821", tax_clade = "Sar" and tax_phylum = "Oomycota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Oomycota · 8 ✖

tax_clade 1

bioproject 1

  • PRJNA888821 · 8 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5069826 5069826 PRJNA888821_P_NODE_25564_length_290_cov_1.861751_g25482_i0 PRJNA888821 25564 290 1.861751 5.3990779 Aphanomyces 100860 SAR_Eukaryotes SAR_Eukaryotes 472 1.74e-128   NTclustered gi|1111669722|ref|NC_032051.1| 112090 g25482 i0 96.181 98.148275862069 288 11 99 0 3 290 4497 4784 Aphanomyces astaci isolate AP03 mitochondrion, complete genome blastn 28463 472 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
7619875 7619875 PRJNA888821_P_NODE_3086_length_388_cov_2.444444_g3005_i0 PRJNA888821 3086 388 2.444444 9.48444272 Aphanomyces 100860 SAR_Eukaryotes SAR_Eukaryotes 712 0   NTclustered gi|363498776|gb|JN662487.1| 120398 g3005 i0 99.742 99.9561855670103 388 1 100 0 1 388 332 719 Aphanomyces stellatus strain GF 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 38783 717 0.99302649930265 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces stellatus
8515716 8515716 PRJNA888821_P_NODE_307_length_840_cov_3.829205_g257_i0 PRJNA888821 307 840 3.829205 32.165322 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 1275 0   NTclustered gi|698793876|ref|XR_717098.1| 112090 g257 i0 95.833 89.7392857142857 792 27 94 5 1 789 2784 1996 Aphanomyces astaci 28S ribosomal RNA rRNA blastn 75381 1275 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
12342066 12342066 PRJNA888821_P_NODE_3690_length_367_cov_1.918367_g3609_i0 PRJNA888821 3690 367 1.918367 7.04040689 Achlya hypogyna 1202772 SAR_Eukaryotes SAR_Eukaryotes 619 7.62e-173   NTclustered gi|542687346|ref|NC_022178.1| 1202772 g3609 i0 97.027 109.215258855586 370 7 100 2 1 367 5920 6288 Achlya hypogyna mitochondrion, complete genome blastn 40082 619 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Achlya Achlya hypogyna
13616395 13616395 PRJNA888821_P_NODE_2651_length_407_cov_3.500000_g2572_i0 PRJNA888821 2651 407 3.5 14.245 Saprolegnia parasitica 101203 SAR_Eukaryotes SAR_Eukaryotes 597 3.999999999999999e-166   NTclustered gi|813199067|ref|XR_001099866.1| 695850 g2572 i0 93.154 71.6904176904177 409 24 100 4 1 407 1317 1723 Saprolegnia parasitica CBS 223.65 28S ribosomal RNA rRNA blastn 29178 597 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
18714102 18714102 PRJNA888821_P_NODE_2595_length_409_cov_11.386905_g2516_i0 PRJNA888821 2595 409 11.386905 46.57244145 Aphanomyces brasiliensis 2525538 SAR_Eukaryotes SAR_Eukaryotes 750 0   NTclustered gi|2098511708|gb|OK235679.1| 2525538 g2516 i0 99.756 100.105134474328 409 1 100 0 1 409 940 532 Aphanomyces brasiliensis voucher CCIBt4545 small subunit ribosomal RNA gene, partial sequence blastn 40943 750 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces brasiliensis
24193450 24193450 PRJNA888821_P_NODE_38419_length_243_cov_0.905882_g38336_i0 PRJNA888821 38419 243 0.905882 2.20129326 Peronospora 70742 SAR_Eukaryotes SAR_Eukaryotes 422 1.45e-113   NTclustered gi|1663822467|gb|MH730839.1| 120572 g38336 i0 97.942 99.9958847736626 243 5 100 0 1 243 557 315 Peronospora bulbocapni voucher GLM64102 28S ribosomal RNA gene, partial sequence blastn 24299 422 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Peronospora Peronospora bulbocapni
30379676 30379676 PRJNA888821_P_NODE_37192_length_246_cov_0.861272_g37109_i0 PRJNA888821 37192 246 0.861272 2.11872912 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 89.4 9.89e-19   NR KAF0732840.1 100861 g37109 i0 56.3 1.95121951219512 80 34 97.6 1 6 245 230 308 KAF0732840.1 hypothetical protein Ae201684_010169 [Aphanomyces euteiches] diamond 480 89.4 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;