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contig_metadata

14 rows where bioproject = "PRJNA888821", tax_clade = "Opisthokonta" and tax_phylum = "Nematoda"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 14 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 14 ✖

bioproject 1

  • PRJNA888821 · 14 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2138249 2138249 PRJNA888821_P_NODE_29322_length_273_cov_2.145000_g29240_i0 PRJNA888821 29322 273 2.145 5.85585 Caenorhabditis elegans 6239 Nematoda Nematoda 499 7.45e-137   NTclustered gi|28396069|gb|AY204194.1| 6239 g29240 i0 99.634 99.7106227106227 273 1 100 0 1 273 922 650 Caenorhabditis elegans clone yk805b2 nuclear receptor (NHR-108) pseudogene mRNA, complete sequence blastn 27221 499 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
3413688 3413688 PRJNA888821_P_NODE_35643_length_249_cov_0.875000_g35560_i0 PRJNA888821 35643 249 0.875 2.17875 Caenorhabditis elegans 6239 Nematoda Nematoda 460 3.16e-125   NTclustered gi|687865759|emb|LK927600.1| 6239 g35560 i0 100 3.65461847389558 249 0 100 0 1 249 65832 66080 Caenorhabditis elegans genome assembly C_elegans_Bristol_N2_v1_5_4 ,scaffold CELN2_scaffold0000065 blastn 910 460 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
4691212 4691212 PRJNA888821_P_NODE_29124_length_274_cov_1.014925_g29042_i0 PRJNA888821 29124 274 1.014925 2.7808945 Caenorhabditis elegans 6239 Nematoda Nematoda 501 2.08e-137   NTclustered gi|1972266898|ref|NM_001028105.7| 6239 g29042 i0 99.635 8 274 1 100 0 1 274 4227 3954 Caenorhabditis elegans Vitellogenin-6 (vit-6), partial mRNA blastn 2192 501 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
8515820 8515820 PRJNA888821_P_NODE_37007_length_246_cov_0.890173_g36924_i0 PRJNA888821 37007 246 0.890173 2.18982558 Caenorhabditis elegans 6239 Nematoda Nematoda 455 1.4500000000000002e-123   NTclustered gi|351020686|emb|FO080294.1| 6239 g36924 i0 100 8.79268292682927 246 0 100 0 1 246 9348 9593 Caenorhabditis elegans Cosmid F26F12, complete sequence blastn 2163 455 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
9790884 9790884 PRJNA888821_P_NODE_3728_length_366_cov_1.313993_g3647_i0 PRJNA888821 3728 366 1.313993 4.80921438 Caenorhabditis elegans 6239 Nematoda Nematoda 676 0   NTclustered gi|25167357|ref|NR_000053.1| 6239 g3647 i0 100 92.1530054644809 366 0 100 0 1 366 385 20 Caenorhabditis elegans 18S ribosomal RNA (rrn-1.1), rRNA blastn 33728 676 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
12342372 12342372 PRJNA888821_P_NODE_650_length_637_cov_3.191489_g580_i0 PRJNA888821 650 637 3.191489 20.32978493 Sudhausia aristotokia 1357959 Nematoda Nematoda 119 6.15e-22   NTclustered gi|675118807|gb|KJ877278.1| 1357959 g580 i0 79.33 20.2684458398744 179 30 27 7 61 234 1421 1597 Sudhausia aristotokia strain RS9011 28S ribosomal RNA gene, partial sequence blastn 12911 119 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Diplogasteridae Sudhausia Sudhausia aristotokia
18714239 18714239 PRJNA888821_P_NODE_3355_length_378_cov_1.009836_g3274_i0 PRJNA888821 3355 378 1.009836 3.81718008 Caenorhabditis elegans 6239 Nematoda Nematoda 699 0   NTclustered gi|1831513691|ref|NM_069160.6| 6239 g3274 i0 100 10.8359788359788 378 0 100 0 1 378 475 98 Caenorhabditis elegans Nematode cuticle collagen N-terminal domain-containing protein (col-119), partial mRNA blastn 4096 699 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
22539752 22539752 PRJNA888821_P_NODE_38498_length_243_cov_0.905882_g38415_i0 PRJNA888821 38498 243 0.905882 2.20129326 Caenorhabditis elegans 6239 Nematoda Nematoda 449 6.65e-122   NTclustered gi|1831511604|ref|NM_001268223.3| 6239 g38415 i0 100 6.01234567901235 243 0 100 0 1 243 938 1180 Caenorhabditis elegans uncharacterized protein (brp-1), partial mRNA blastn 1461 449 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
23815152 23815152 PRJNA888821_P_NODE_38959_length_242_cov_0.911243_g38876_i0 PRJNA888821 38959 242 0.911243 2.20520806 Caenorhabditis elegans 6239 Nematoda Nematoda 448 2.3799999999999995e-121   NTclustered gi|1418456|emb|Z75530.1| 6239 g38876 i0 100 4 242 0 100 0 1 242 38197 37956 Caenorhabditis elegans Cosmid C47E8, complete sequence blastn 968 448 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
27055600 27055600 PRJNA888821_P_NODE_32082_length_261_cov_4.648936_g31999_i0 PRJNA888821 32082 261 4.648936 12.13372296 Haemonchus contortus 6289 Nematoda Nematoda 70.1 2.83e-12   NR XGW11388.1 6289 g31999 i0 51.4 3.2183908045977 70 32 78.2 2 6 209 24 93 XGW11388.1 hypothetical protein V3C99_012694 [Haemonchus contortus] diamond 840 70.1 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Trichostrongylidae Haemonchus Haemonchus contortus
29549993 29549993 PRJNA888821_P_NODE_52270_length_199_cov_13.515873_g52187_i0 PRJNA888821 52270 199 13.515873 26.89658727 Aphelenchoides besseyi 269767 Nematoda Nematoda 55.5 6.55e-7   NR KAI6194788.1 269767 g52187 i0 42.9 2.26130653266332 49 28 73.9 0 197 51 74 122 KAI6194788.1 Acr-17 [Aphelenchoides besseyi] diamond 450 55.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Aphelenchoides Aphelenchoides besseyi
29771040 29771040 PRJNA888821_P_NODE_50711_length_203_cov_15.361538_g50628_i0 PRJNA888821 50711 203 15.361538 31.18392214 Toxocara canis 6265 Nematoda Nematoda 98.6 4.79e-22   NR KHN86773.1 6265 g50628 i0 71.7 0.886699507389163 60 17 88.7 0 2 181 712 771 KHN86773.1 Polypeptide N-acetylgalactosaminyltransferase 4 [Toxocara canis] diamond 180 98.6 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Toxocaridae Toxocara Toxocara canis
30782177 30782177 PRJNA888821_P_NODE_48234_length_210_cov_24.897810_g48151_i0 PRJNA888821 48234 210 24.89781 52.285401 Diploscapter pachys 2018661 Nematoda Nematoda 57 2.2e-7   NR PAV59429.1 2018661 g48151 i0 52.7 1.57142857142857 55 26 78.6 0 169 5 398 452 PAV59429.1 hypothetical protein WR25_13539 [Diploscapter pachys] diamond 330 57 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Diploscapter Diploscapter pachys
32300462 32300462 PRJNA888821_P_NODE_30219_length_269_cov_2.862245_g30136_i0 PRJNA888821 30219 269 2.862245 7.69943905 Ancylostoma ceylanicum 53326 Nematoda Nematoda 43.9 0.0204   NR EYB93007.1 53326 g30136 i0 46.2 0.579925650557621 52 19 58 2 114 269 493 535 EYB93007.1 hypothetical protein Y032_0187g1116 [Ancylostoma ceylanicum] diamond 156 43.9 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Ancylostomatidae Ancylostoma Ancylostoma ceylanicum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;