RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA888821", tax_clade = "FCB group" and tax_phylum = "Ignavibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Ignavibacteriota · 2 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 2 ✖

bioproject 1

  • PRJNA888821 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29992362 29992362 PRJNA888821_P_NODE_46391_length_216_cov_13.328671_g46308_i0 PRJNA888821 46391 216 13.328671 28.78992936 Ignavibacteriota bacterium 2026749 Bacteria Bacteria 60.5 1.51e-8   NR MCB0713502.1 2026749 g46308 i0 72.1 3.04166666666667 43 12 59.7 0 1 129 724 766 MCB0713502.1 PAS domain S-box protein [Ignavibacteriota bacterium] diamond 657 60.5 1 Bacteria FCB group Pseudomonadati Ignavibacteriota         Ignavibacteriota bacterium
30782158 30782158 PRJNA888821_P_NODE_1694_length_465_cov_1.040816_g1619_i0 PRJNA888821 1694 465 1.040816 4.8397944 Ignavibacteriaceae bacterium 2651163 Bacteria Bacteria 250 6.33e-78   NR MDY0084068.1 2651163 g1619 i0 82.5 0.993548387096774 154 27 99.4 0 2 463 26 179 MDY0084068.1 RNA polymerase sigma factor [Ignavibacteriaceae bacterium] diamond 462 250 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria Ignavibacteriales Ignavibacteriaceae   Ignavibacteriaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;