RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA888821" and tax_clade = "Candidatus Thermofonsia Clade 3"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Candidatus Thermofonsia Clade 3 · 3 ✖

bioproject 1

  • PRJNA888821 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
23815110 23815110 PRJNA888821_P_NODE_36319_length_247_cov_9.890805_g36236_i0 PRJNA888821 36319 247 9.890805 24.43028835 Candidatus Roseilinea sp. 2838777 Bacteria Bacteria 213 9.68e-51   NTclustered gi|2314722916|dbj|AP024676.1| 2838777 g36236 i0 82.47 29.4655870445344 251 36 99 8 1 246 3495863 3496110 MAG: Candidatus Roseilinea sp. KatS3mg053 DNA, complete genome blastn 7278 213 1 Bacteria Candidatus Thermofonsia Clade 3 Bacillati Chloroflexota Candidatus Thermofontia     Candidatus Roseilinea Candidatus Roseilinea sp.
25089029 25089029 PRJNA888821_P_NODE_38120_length_243_cov_17.129412_g38037_i0 PRJNA888821 38120 243 17.129412 41.62447116 Candidatus Roseilinea sp. 2838777 Bacteria Bacteria 196 9.56e-46   NTclustered gi|2314722916|dbj|AP024676.1| 2838777 g38037 i0 82.667 122.971193415638 225 36 92 3 11 233 3494835 3495058 MAG: Candidatus Roseilinea sp. KatS3mg053 DNA, complete genome blastn 29882 196 1 Bacteria Candidatus Thermofonsia Clade 3 Bacillati Chloroflexota Candidatus Thermofontia     Candidatus Roseilinea Candidatus Roseilinea sp.
28413615 28413615 PRJNA888821_P_NODE_9566_length_310_cov_11.675105_g9484_i0 PRJNA888821 9566 310 11.675105 36.1928255 Candidatus Thermofonsia Clade 3 bacterium 2364212 Bacteria Bacteria 132 8.25e-36   NR PJF46338.1 2364212 g9484 i0 58.6 1.0741935483871 111 27 89 1 278 3 13 123 PJF46338.1 MAG: hypothetical protein CUN48_14305, partial [Candidatus Thermofonsia Clade 3 bacterium] diamond 333 132 1 Bacteria Candidatus Thermofonsia Clade 3 Bacillati Chloroflexota Candidatus Thermofontia       Candidatus Thermofonsia Clade 3 bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;