RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA888821" and tax_clade = "Amoebozoa"

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tax_phylum 2

analysis 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 7 ✖

bioproject 1

  • PRJNA888821 · 7 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2517207 2517207 PRJNA888821_P_NODE_15002_length_310_cov_6.544304_g14920_i0 PRJNA888821 15002 310 6.544304 20.2873424 Paramoeba 200890 Discosea other_Eukaryota 73.1 2.22e-8   NTclustered gi|1079488025|ref|NC_031417.1| 180228 g14920 i0 97.619 1.65161290322581 42 1 14 0 10 51 42743 42784 Paramoeba pemaquidensis culture-collection CCAP:1560/4 mitochondrion, complete genome blastn 512 73.1 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Paramoeba Paramoeba pemaquidensis
5966034 5966034 PRJNA888821_P_NODE_27625_length_280_cov_9.314010_g27543_i0 PRJNA888821 27625 280 9.31401 26.079228 Cochliopodium larifeili 1017091 Discosea other_Eukaryota 414 2.86e-111   NTclustered gi|330902856|gb|JF298254.1| 1017091 g27543 i0 93.571 31.3071428571429 280 15 100 3 1 280 1393 1669 Cochliopodium larifeili clone 902 18S ribosomal RNA gene, partial sequence blastn 8766 414 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium larifeili
8515782 8515782 PRJNA888821_P_NODE_34687_length_251_cov_1.719101_g34604_i0 PRJNA888821 34687 251 1.719101 4.31494351 Ripella sp. GP2 1217115 Discosea other_Eukaryota 370 5.53e-98   NTclustered gi|399764204|gb|JQ271715.1| 1217115 g34604 i0 98.122 86.804780876494 213 3 85 1 1 213 11 222 Ripella sp. GP2 18S ribosomal RNA gene, partial sequence blastn 21788 370 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella sp. GP2
16165985 16165985 PRJNA888821_P_NODE_8573_length_310_cov_13.333333_g8491_i0 PRJNA888821 8573 310 13.333333 41.3333323 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 161 4.6099999999999995e-35   NTclustered gi|562028|gb|U12386.1|ACU12386 5755 g8491 i0 86 1.45161290322581 150 21 48 0 161 310 33215 33364 Acanthamoeba castellanii mitochondrion, complete genome blastn 450 161 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
22539942 22539942 PRJNA888821_P_NODE_48178_length_211_cov_5.463768_g48095_i0 PRJNA888821 48178 211 5.463768 11.52855048 Physarum polycephalum 5791 Evosea other_Eukaryota 148 2.3e-31   NTclustered gi|3225|emb|V01160.1| 5791 g48095 i0 80 6.01421800947867 220 29 99 14 1 210 18 232 Introns 1 and 2 of Physarum gene for 26S ribosomal RNA, together with flanking exon regions blastn 1269 148 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Physarum Physarum polycephalum
31160960 31160960 PRJNA888821_P_NODE_8235_length_310_cov_14.050633_g8153_i0 PRJNA888821 8235 310 14.050633 43.5569623 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 57.4 4.41e-8   NR PRP77680.1 1890364 g8153 i0 55.1 0.474193548387097 49 21 47.4 1 309 163 39 86 PRP77680.1 hypothetical protein PROFUN_00541 [Planoprotostelium fungivorum] diamond 147 57.4 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
32616281 32616281 PRJNA888821_P_NODE_50500_length_204_cov_8.893130_g50417_i0 PRJNA888821 50500 204 8.89313 18.1419852 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 79.3 2.03e-16   NR AKT94010.1 5755 g50417 i0 88.6 0.647058823529412 44 5 64.7 0 134 3 1 44 AKT94010.1 NADH dehydrogenase subunit 9 [Acanthamoeba castellanii] diamond 132 79.3 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;