RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA888104" and tax_clade = "Bacteria candidate phyla"

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tax_superkingdom 1

tax_clade 1

  • Bacteria candidate phyla · 2 ✖

bioproject 1

  • PRJNA888104 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30948234 30948234 PRJNA888104_P_NODE_13414_length_280_cov_1.383886_g13345_i0 PRJNA888104 13414 280 1.383886 3.8748808 Candidatus Saccharimonas 1331051 Bacteria Bacteria 44.7 0.00445   NR HSX01470.1 1917697 g13345 i0 38.2 1.74642857142857 55 34 58.9 0 57 221 38 92 HSX01470.1 hypothetical protein [Candidatus Saccharimonas sp.] diamond 489 44.7 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota Candidatus Saccharimonadia Candidatus Saccharimonadales Candidatus Saccharimonadaceae Candidatus Saccharimonas Candidatus Saccharimonas sp.
32395137 32395137 PRJNA888104_P_NODE_22719_length_229_cov_0.900000_g22650_i0 PRJNA888104 22719 229 0.9 2.061 Candidatus Saccharimonadaceae bacterium 2830836 Bacteria Bacteria 97.4 1.47e-21   NR HJM04599.1 2830836 g22650 i0 65.8 1.99126637554585 76 26 99.6 0 228 1 64 139 HJM04599.1 glycosyltransferase family 39 protein [Candidatus Saccharimonadaceae bacterium] diamond 456 97.4 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota Candidatus Saccharimonadia Candidatus Saccharimonadales Candidatus Saccharimonadaceae   Candidatus Saccharimonadaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;