RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA886442" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA886442 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
32118245 32118245 PRJNA886442_P_NODE_11698_length_250_cov_0.881356_g11534_i0 PRJNA886442 11698 250 0.881356 2.20339 Opisthokonta 33154 Nematoda Nematoda 111 5.6e-27   NR OUC39547.1 6335 g11534 i0 87.9 2.064 58 7 69.6 0 2 175 152 209 OUC39547.1 WD domain, G-beta repeat protein [Trichinella nativa] diamond 516 111 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella nativa
32623979 32623979 PRJNA886442_P_NODE_3840_length_374_cov_1.980066_g3676_i0 PRJNA886442 3840 374 1.980066 7.40544684 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 63.5 1.44e-10   NR EYB92789.1 53326 g3676 i0 62.3 2.18983957219251 53 19 42.5 1 102 260 4 55 EYB92789.1 hypothetical protein Y032_0190g1265 [Ancylostoma ceylanicum] diamond 819 63.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Ancylostomatidae Ancylostoma Ancylostoma ceylanicum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;